g.arboreum_cottongen_reftransV1_0019357, g.arboreum_cottongen_reftransV1_0019357 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019357
Unique Nameg.arboreum_cottongen_reftransV1_0019357
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length406
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A0D2STE8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G070100 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.578e-16
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = -2
Query:  277 SSEEADADDEWTESTRECASGIAASGMSSDERNQKQVSARDLM 405
            SSEEADADDEWTESTRE ASGIAASGMSSDERNQKQVSAR LM
Sbjct:  205 SSEEADADDEWTESTRERASGIAASGMSSDERNQKQVSARALM 247          
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A061EMJ2_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_020767 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.080e-15
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = -3
Query:   87 YVQNQGLDLHLAEIHQYEELKCPHLATLQKA-VVLPLRRGNPQIQRLETIV 236
            Y+QNQGL LHLAEIH Y+ELKCPHLAT   A VVLPLR+G  +IQRLET+V
Sbjct:  243 YIQNQGLGLHLAEIHPYKELKCPHLATHPIAEVVLPLRQGGLRIQRLETVV 293          

HSP 2 Score: 35.039 bits (79), Expect = 1.080e-15
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = -2
Query:  304 SSEEADADDEWT-ESTRE---CASGIAASGMSSDERNQ 405
            SS+EADADDEWT +STRE    ASG AASG+SSDERNQ
Sbjct:  205 SSDEADADDEWTDKSTREQASSASGKAASGVSSDERNQ 242          
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A0B0PL90_GOSAR (Rrna-processing efg1 OS=Gossypium arboreum GN=F383_01190 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.802e-13
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -2
Query:  298 SSEEADADDEWTESTRECASGIAASGMSSDERNQKQ 405
            SSEEADADDEWTESTRECASGIAASGMSSDERNQ Q
Sbjct:  205 SSEEADADDEWTESTRECASGIAASGMSSDERNQVQ 240          
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A0D2NN10_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G070100 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.344e-11
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = -2
Query:  298 SSEEADADDEWTESTRECASGIAASGMSSDERNQKQ 405
            SSEEADADDEWTESTRE ASGIAASGMSSDERNQ Q
Sbjct:  205 SSEEADADDEWTESTRERASGIAASGMSSDERNQVQ 240          
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: M5XW71_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007895mg PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.582e-9
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = -2
Query:  277 SSEEADADDEWT-ESTRE---CASGIAASGMSSDERNQKQVSARDLM 405
            SS+EADADDEWT +STRE    ASG A SGMSSDERNQ+QVSAR LM
Sbjct:  203 SSDEADADDEWTDKSTREQASSASGKATSGMSSDERNQRQVSARALM 249          
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A067L706_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02268 PE=4 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.777e-9
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = -2
Query:  277 SSEEADADDEWT-ESTRECAS---GIAASGMSSDERNQKQVSARDLM 405
            SS+EADADDEWT +STRE AS   G AASGMSSDERNQ+Q+SAR LM
Sbjct:  206 SSDEADADDEWTDKSTREQASSTSGKAASGMSSDERNQRQMSARALM 252          
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A072VL87_MEDTR (DUF2361 family protein OS=Medicago truncatula GN=MTR_1g076290 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 2.669e-8
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = -2
Query:  277 SSEEADADDEWT-ESTRECASGIAASGMSSDERNQKQVSARDLM 405
            SS+EADADDE T +STRE ASG A SGMSSDE+NQ+ +SAR LM
Sbjct:  199 SSDEADADDELTDKSTREQASGKAVSGMSSDEKNQRHISARALM 242          
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A0C9S8R6_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_3763_1384 transcribed RNA sequence OS=Wollemia nobilis PE=4 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.474e-8
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = -2
Query:  277 SSEEADADDEWT-ESTRECAS---GIAASGMSSDERNQKQVSARDLM 405
            SS+EADADDEWT +STRE AS   G A SGMSSDE+N++Q SARDLM
Sbjct:  222 SSDEADADDEWTDKSTREPASSASGKATSGMSSDEKNKRQKSARDLM 268          
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: B9RTF8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0909310 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 7.747e-8
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = -2
Query:  277 SSEEADADDEWT-ESTRECAS---GIAASGMSSDERNQKQVSARDLM 405
            SS+EA+ADDEWT +STRE AS   G AASGMSSDERNQ+Q+SAR LM
Sbjct:  208 SSDEANADDEWTDKSTREQASSTSGKAASGMSSDERNQRQMSARALM 254          
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: M0TS67_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.033e-7
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = -2
Query:  277 SSEEADADDEWT-ESTRE---CASGIAASGMSSDERNQKQVSARDLM 405
            SS+EA+ADDEWT +STRE    ASG A SGMSSDERNQ+Q+SAR LM
Sbjct:  205 SSDEAEADDEWTDKSTREPASSASGKATSGMSSDERNQRQMSARVLM 251          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 23
Match NameE-valueIdentityDescription
A0A0D2STE8_GOSRA6.578e-1695.35Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EMJ2_THECC1.080e-1574.51Uncharacterized protein isoform 2 OS=Theobroma cac... [more]
A0A0B0PL90_GOSAR4.802e-1397.22Rrna-processing efg1 OS=Gossypium arboreum GN=F383... [more]
A0A0D2NN10_GOSRA2.344e-1194.44Uncharacterized protein OS=Gossypium raimondii GN=... [more]
M5XW71_PRUPE3.582e-976.60Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067L706_JATCU4.777e-976.60Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A072VL87_MEDTR2.669e-872.73DUF2361 family protein OS=Medicago truncatula GN=M... [more]
A0A0C9S8R6_9SPER3.474e-872.34TSA: Wollemia nobilis Ref_Wollemi_Transcript_3763_... [more]
B9RTF8_RICCO7.747e-874.47Putative uncharacterized protein OS=Ricinus commun... [more]
M0TS67_MUSAM1.033e-772.34Uncharacterized protein OS=Musa acuminata subsp. m... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019357 ID=g.arboreum_cottongen_reftransV1_0019357; Name=g.arboreum_cottongen_reftransV1_0019357; organism=Gossypium arboreum; type=contig; length=406bp
GCGGAGTTCACTTCATGCCTGTTGTTTTCTCTTTTTTGGTCTCCTCTTTC
TGTGTGGTTTGCGAGCATCAGAATTGGAACTTAAGTTACTATTGTTTCCA
GTCTTTGAATTTGAGGATTCCCCCGCCTTAAAGGAAGAACTACTGCTTTT
TGAAGTGTGGCTAGATGTGGACATTTCAGTTCTTCGTATTGATGAATTTC
GGCTAGATGAAGATCCAAACCTTGATTTTGCACGTACAAAGTTTGAAAAA
GAATTACTTGATGGCCTCGGAGGCGGCATTAAATCTCTTGCAGATACCTG
TTTCTGATTCCTTTCATCGCTAGACATGCCGGACGCCGCTATGCCAGAAG
CACACTCCCTTGTACTTTCTGTCCATTCATCATCTGCATCAGCTTCCTCA
CTCGAG
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