g.arboreum_cottongen_reftransV1_0019357, g.arboreum_cottongen_reftransV1_0019357 (contig) Gossypium arboreum
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A0D2STE8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G070100 PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.578e-16 Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = -2 Query: 277 SSEEADADDEWTESTRECASGIAASGMSSDERNQKQVSARDLM 405 SSEEADADDEWTESTRE ASGIAASGMSSDERNQKQVSAR LM Sbjct: 205 SSEEADADDEWTESTRERASGIAASGMSSDERNQKQVSARALM 247
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A061EMJ2_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_020767 PE=4 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.080e-15 Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = -3 Query: 87 YVQNQGLDLHLAEIHQYEELKCPHLATLQKA-VVLPLRRGNPQIQRLETIV 236 Y+QNQGL LHLAEIH Y+ELKCPHLAT A VVLPLR+G +IQRLET+V Sbjct: 243 YIQNQGLGLHLAEIHPYKELKCPHLATHPIAEVVLPLRQGGLRIQRLETVV 293 HSP 2 Score: 35.039 bits (79), Expect = 1.080e-15 Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = -2 Query: 304 SSEEADADDEWT-ESTRE---CASGIAASGMSSDERNQ 405 SS+EADADDEWT +STRE ASG AASG+SSDERNQ Sbjct: 205 SSDEADADDEWTDKSTREQASSASGKAASGVSSDERNQ 242
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A0B0PL90_GOSAR (Rrna-processing efg1 OS=Gossypium arboreum GN=F383_01190 PE=4 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 4.802e-13 Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = -2 Query: 298 SSEEADADDEWTESTRECASGIAASGMSSDERNQKQ 405 SSEEADADDEWTESTRECASGIAASGMSSDERNQ Q Sbjct: 205 SSEEADADDEWTESTRECASGIAASGMSSDERNQVQ 240
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A0D2NN10_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G070100 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.344e-11 Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = -2 Query: 298 SSEEADADDEWTESTRECASGIAASGMSSDERNQKQ 405 SSEEADADDEWTESTRE ASGIAASGMSSDERNQ Q Sbjct: 205 SSEEADADDEWTESTRERASGIAASGMSSDERNQVQ 240
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: M5XW71_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007895mg PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 3.582e-9 Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRE---CASGIAASGMSSDERNQKQVSARDLM 405 SS+EADADDEWT +STRE ASG A SGMSSDERNQ+QVSAR LM Sbjct: 203 SSDEADADDEWTDKSTREQASSASGKATSGMSSDERNQRQVSARALM 249
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A067L706_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02268 PE=4 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 4.777e-9 Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRECAS---GIAASGMSSDERNQKQVSARDLM 405 SS+EADADDEWT +STRE AS G AASGMSSDERNQ+Q+SAR LM Sbjct: 206 SSDEADADDEWTDKSTREQASSTSGKAASGMSSDERNQRQMSARALM 252
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A072VL87_MEDTR (DUF2361 family protein OS=Medicago truncatula GN=MTR_1g076290 PE=4 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 2.669e-8 Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRECASGIAASGMSSDERNQKQVSARDLM 405 SS+EADADDE T +STRE ASG A SGMSSDE+NQ+ +SAR LM Sbjct: 199 SSDEADADDELTDKSTREQASGKAVSGMSSDEKNQRHISARALM 242
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: A0A0C9S8R6_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_3763_1384 transcribed RNA sequence OS=Wollemia nobilis PE=4 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 3.474e-8 Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRECAS---GIAASGMSSDERNQKQVSARDLM 405 SS+EADADDEWT +STRE AS G A SGMSSDE+N++Q SARDLM Sbjct: 222 SSDEADADDEWTDKSTREPASSASGKATSGMSSDEKNKRQKSARDLM 268
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: B9RTF8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0909310 PE=4 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 7.747e-8 Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRECAS---GIAASGMSSDERNQKQVSARDLM 405 SS+EA+ADDEWT +STRE AS G AASGMSSDERNQ+Q+SAR LM Sbjct: 208 SSDEANADDEWTDKSTREQASSTSGKAASGMSSDERNQRQMSARALM 254
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Match: M0TS67_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.033e-7 Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = -2 Query: 277 SSEEADADDEWT-ESTRE---CASGIAASGMSSDERNQKQVSARDLM 405 SS+EA+ADDEWT +STRE ASG A SGMSSDERNQ+Q+SAR LM Sbjct: 205 SSDEAEADDEWTDKSTREPASSASGKATSGMSSDERNQRQMSARVLM 251 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 23
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BLAST of g.arboreum_cottongen_reftransV1_0019357 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019357 ID=g.arboreum_cottongen_reftransV1_0019357; Name=g.arboreum_cottongen_reftransV1_0019357; organism=Gossypium arboreum; type=contig; length=406bpback to top |