g.arboreum_cottongen_reftransV1_0004644, g.arboreum_cottongen_reftransV1_0004644 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0004644
Unique Name	g.arboreum_cottongen_reftransV1_0004644
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	803

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr2	chromosome	g.arboreum_cottongen_reftransV1_0004644:1..803 . Chr2:69176359..69177443 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0B0PLU1_GOSAR (Floral homeotic APETALA 2-like protein OS=Gossypium arboreum GN=F383_00249 PE=4 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 6.286e-112
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1

Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTPWQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPSTPHFYCRTER 567
            AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTPWQIQGPYGGTKEMSLFPSAASSGFSSSIITSPSAAAGQLRVPNATFLQHHFPPVIMNPSTPHFYCRTER
Sbjct:  259 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTPWQIQGPYGGTKEMSLFPSAASSGFSSSIITSPSAAAGQLRVPNATFLQHHFPPVIMNPSTPHFYCRTER 447

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0D2NSM9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G251500 PE=4 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 4.395e-105
Identity = 182/189 (96.30%), Postives = 183/189 (96.83%), Query Frame = 1

Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTPWQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPSTPHFYCRTER 567
            AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQ  YDGLPVASGARFENSA ATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDS PWQIQGPYGGTKEM LFPSAASSGFSSSIITSPSAAAGQLRVPNATFLQHHFPPVIMN +TPHFYCRTER
Sbjct:  293 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQRGYDGLPVASGARFENSAPATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSPPWQIQGPYGGTKEMPLFPSAASSGFSSSIITSPSAAAGQLRVPNATFLQHHFPPVIMNSNTPHFYCRTER 481

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A061ESW7_THECC (AP2.7 isoform 2 OS=Theobroma cacao GN=TCM_022077 PE=4 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.210e-71
Identity = 142/191 (74.35%), Postives = 158/191 (82.72%), Query Frame = 1

Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFL-QHHFPPVIMNPSTPHFYCRT 561
            AVTNFEPSTYEGELISES+NGD+N+ LDLNLGIAPP TS+ QKEN NS NF  Q  +DGLPV +GAR +NSA ATMRVQPSLGQA AFKH+ NWN ANPSFFPVYRERAIEKR+EVD  P   WQIQG YGG   + LFP+AASSGFSSS ITSPSAAAGQL +PN TFL +HHFPP I NP+  HFYC++
Sbjct:  288 AVTNFEPSTYEGELISESDNGDRNQGLDLNLGIAPPYTSDPQKENNNSDNFAIQRGWDGLPVETGARIDNSAPATMRVQPSLGQAMAFKHLQNWNGANPSFFPVYRERAIEKRMEVDYAPNWAWQIQGLYGGANPVPLFPTAASSGFSSSTITSPSAAAGQLCIPNTTFLHRHHFPPAITNPNISHFYCQS 478

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A061ETL4_THECC (AP2.7 isoform 1 OS=Theobroma cacao GN=TCM_022077 PE=4 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.519e-71
Identity = 142/191 (74.35%), Postives = 158/191 (82.72%), Query Frame = 1

Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFL-QHHFPPVIMNPSTPHFYCRT 561
            AVTNFEPSTYEGELISES+NGD+N+ LDLNLGIAPP TS+ QKEN NS NF  Q  +DGLPV +GAR +NSA ATMRVQPSLGQA AFKH+ NWN ANPSFFPVYRERAIEKR+EVD  P   WQIQG YGG   + LFP+AASSGFSSS ITSPSAAAGQL +PN TFL +HHFPP I NP+  HFYC++
Sbjct:  303 AVTNFEPSTYEGELISESDNGDRNQGLDLNLGIAPPYTSDPQKENNNSDNFAIQRGWDGLPVETGARIDNSAPATMRVQPSLGQAMAFKHLQNWNGANPSFFPVYRERAIEKRMEVDYAPNWAWQIQGLYGGANPVPLFPTAASSGFSSSTITSPSAAAGQLCIPNTTFLHRHHFPPAITNPNISHFYCQS 493

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0D2QBS2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G251500 PE=4 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 9.297e-70
Identity = 144/189 (76.19%), Postives = 145/189 (76.72%), Query Frame = 1

Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTPWQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPSTPHFYCRTER 567
            AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQ  YDGLPVASGA                                       RERAIEKRIEVDS PWQIQGPYGGTKEM LFPSAASSGFSSSIITSPSAAAGQLRVPNATFLQHHFPPVIMN +TPHFYCRTER
Sbjct:  293 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQRGYDGLPVASGA---------------------------------------RERAIEKRIEVDSPPWQIQGPYGGTKEMPLFPSAASSGFSSSIITSPSAAAGQLRVPNATFLQHHFPPVIMNSNTPHFYCRTER 442

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0D2QIU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G251500 PE=4 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.103e-64
Identity = 103/106 (97.17%), Postives = 103/106 (97.17%), Query Frame = 1

Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYR 318
            AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQ  YDGLPVASGARFENSA ATMRVQPSLGQATAFKHVPNWNVANPSFFPVYR
Sbjct:  293 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQRGYDGLPVASGARFENSAPATMRVQPSLGQATAFKHVPNWNVANPSFFPVYR 398

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: B9SGS1_RICCO (Floral homeotic protein APETALA2, putative OS=Ricinus communis GN=RCOM_0819800 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.422e-42
Identity = 105/191 (54.97%), Postives = 130/191 (68.06%), Query Frame = 1

Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPS-TPHFYCRT 561
            AVTNFEPSTYEGE++SE  N D N+ LDLNLGIAPP TS  QK N  +S FP+Q S+DG P   G    +S SAT++ +     +  F+H P W   + +FFP+Y+ERA+EKR+EVDS P   WQ QGP GG   +  F +AASSGF SS IT+PSAAAGQL+ PN+  L HHF P I NPS   HFY ++
Sbjct:  277 AVTNFEPSTYEGEIMSEVNNADGNQNLDLNLGIAPPDTSGTQKINIETSGFPYQSSWDGRPNDRGQMILSSGSATLKDELPYDPSMPFEHPPLWGGLHSNFFPIYKERAMEKRMEVDSWPNWTWQAQGPCGGANPLPFFSTAASSGFGSSTITAPSAAAGQLQFPNSAILHHHFSPSITNPSNVSHFYYKS 467

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: B9MT78_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s13460g PE=4 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.017e-39
Identity = 107/191 (56.02%), Postives = 127/191 (66.49%), Query Frame = 1

Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP-W--QIQGPYGGTKE-MXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPSTPHFYCRT 561
            AVTNFEPSTYEGE++SE  NGD N+ LDLNLGIAPP TS+  K N N   F FQ  +DGL +    +  NSASATM+ Q   G      H P W+  N   FP+Y ERAIEKR+EVDS P W  QIQGPYGG    + LF +AASSGF+SS I +PSAAAGQL+ P++T L H FPP     +   FYCR+
Sbjct:  307 AVTNFEPSTYEGEILSEPNNGDGNQNLDLNLGIAPPDTSDGLKVNSNMGGFYFQSGWDGLSIDRAPKILNSASATMKNQQPNGPGMTSVHPPTWDGVNHHIFPIYEERAIEKRMEVDSFPNWTRQIQGPYGGGANPLPLFSTAASSGFASSAIMAPSAAAGQLQFPSSTIL-HRFPPFTNPSNISQFYCRS 496

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: M5VY07_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005230mg PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.763e-39
Identity = 98/190 (51.58%), Postives = 121/190 (63.68%), Query Frame = 1

Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPSTPHFYCRT 561
            AVTNFEP++Y+G+++SE+ NG  ++ LDLNLGIAPP  S LQK N N S+FP Q   D +P+    R EN A A MR Q S G   A +  P  +  N SFFP+  ERA EKR++V+S P   WQ+QG  GG   M LF +AASSGF SS  TSP AA  QL  PN T L HHF P  +  + P FYCR+
Sbjct:  282 AVTNFEPNSYDGQIMSEAHNGGSDKSLDLNLGIAPPLVSELQKNNSNLSSFPVQLGCDDIPIHMRTRNENCAPAPMRAQLSHGSMVASEEPPIMSNINSSFFPIQMERATEKRMDVNSFPNWAWQLQGLNGGATPMPLFSAAASSGFPSSTATSPPAAVTQLHFPNTTILHHHFSPSTVTNNIPGFYCRS 471

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: B9IIZ0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s08530g PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.137e-37
Identity = 104/192 (54.17%), Postives = 123/192 (64.06%), Query Frame = 1

Query:    1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP-W--QIQGPYGGTKE-MXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPS-TPHFYCRT 561
            AVTNFEPS YEGE++SE  +GD N+ LDL LGIAPP  S+  K N N   F F   +DG+      +F NS SATM+ Q   G      H P W+  N   FP+Y ERAIEKR+EVDS P W  QIQGPYGG    + LF +AASSGF+SS I +PSAAAGQL  P++T L H F P I NPS    FYCR+
Sbjct:  270 AVTNFEPSKYEGEILSEPSSGDGNQNLDLKLGIAPPDASDSLKVNSNMGGFYFHGGWDGVSTDRAPKFLNSVSATMKNQLPNGPGVTSVHPPMWDGINHRIFPIYEERAIEKRMEVDSFPNWTRQIQGPYGGGANPLPLFSTAASSGFASSAIMAPSAAAGQLHYPSSTILHHRFSPPITNPSNISQFYCRS 461

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0PLU1_GOSAR	6.286e-112	100.00	Floral homeotic APETALA 2-like protein OS=Gossypiu...	[more]
A0A0D2NSM9_GOSRA	4.395e-105	96.30	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061ESW7_THECC	1.210e-71	74.35	AP2.7 isoform 2 OS=Theobroma cacao GN=TCM_022077 P...	[more]
A0A061ETL4_THECC	1.519e-71	74.35	AP2.7 isoform 1 OS=Theobroma cacao GN=TCM_022077 P...	[more]
A0A0D2QBS2_GOSRA	9.297e-70	76.19	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QIU0_GOSRA	4.103e-64	97.17	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
B9SGS1_RICCO	1.422e-42	54.97	Floral homeotic protein APETALA2, putative OS=Rici...	[more]
B9MT78_POPTR	4.017e-39	56.02	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
M5VY07_PRUPE	8.763e-39	51.58	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
B9IIZ0_POPTR	8.137e-37	54.17	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32467:SF28	SUBFAMILY NOT NAMED	coord: 1..161
IPR031112	AP2-like ethylene-responsive transcription factor	PANTHER	PTHR32467	FAMILY NOT NAMED	coord: 1..161

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0004644 ID=g.arboreum_cottongen_reftransV1_0004644; Name=g.arboreum_cottongen_reftransV1_0004644; organism=Gossypium arboreum; type=contig; length=803bp
GCGGTCACCAACTTTGAGCCAAGCACCTACGAGGGGGAACTAATCTCCGA
ATCTGAAAACGGAGACCAGAATCGAGTTCTTGACTTGAACTTGGGCATAG
CACCCCCTTGTACGTCCAATCTCCAAAAGGAGAATGAAAATTCAAGCAAC
TTTCCTTTCCAGCACAGCTATGATGGCTTGCCTGTTGCGAGTGGAGCAAG
GTTCGAGAACTCTGCTTCGGCAACAATGAGAGTTCAACCTAGTCTTGGCC
AAGCAACAGCATTCAAGCACGTTCCGAATTGGAATGTTGCAAACCCCAGT
TTCTTTCCAGTTTATAGGGAAAGAGCAATAGAGAAGAGGATAGAAGTAGA
TTCCACACCATGGCAAATCCAAGGTCCTTATGGTGGAACAAAAGAAATGT
CACTCTTCCCTAGTGCAGCATCATCAGGATTCTCATCTTCAATAATTACT
TCACCATCAGCTGCTGCTGGCCAACTCCGAGTTCCCAACGCAACTTTCCT
CCAACACCATTTCCCCCCGGTGATCATGAACCCGAGCACCCCCCATTTCT
ACTGCAGAACCGAAAGGTAGCTGATTACCATGCCACCCCCATCTTATATT
ATCTGTAGCTAAATCGATGAAAAAAAGAATTCGAGGGCGTACCGAAATGC
CGGTATTTAAGAAGGCTGGGCTAGGCTACTTGACTGATCATATTTATTGT
TGTAAAGCTCATCAAAGCTACTTAAGCTAATGTATTATATGTGGTTGAAA
TGAACAACATTTGGTCAATTAATTAGACTTGGTTTGAAAGTGACTTCTTG
TTT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR031112	AP2-like_transcript_factor

Vocabulary: **Biological Process**
Term	Definition
GO:0007275	multicellular organism development
GO:0006355	regulation of DNA-templated transcription

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	DNA-binding transcription factor activity

Search form

g.arboreum_cottongen_reftransV1_0004644, g.arboreum_cottongen_reftransV1_0004644 (contig) Gossypium arboreum

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