g.arboreum_cottongen_reftransV1_0006124, g.arboreum_cottongen_reftransV1_0006124 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006124
Unique Nameg.arboreum_cottongen_reftransV1_0006124
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr2chromosomeg.arboreum_cottongen_reftransV1_0006124:1..299 .
Chr2:80084434..80084732 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: A0A0B0MZX5_GOSAR (Endoglucanase OS=Gossypium arboreum GN=F383_30508 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 6.136e-62
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN
Sbjct:  227 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 325
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: A0A0D2QFD1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G188600 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.081e-60
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVHSANPDVLVILSGLSYDSDLSFIQNRP QLSFSGKLVFEVHWYGFS+GQ WVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN
Sbjct:  227 EAVHSANPDVLVILSGLSYDSDLSFIQNRPVQLSFSGKLVFEVHWYGFSDGQAWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 325
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: A0A061EEN1_THECC (Cellulase protein OS=Theobroma cacao GN=TCM_010637 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.209e-55
Identity = 88/99 (88.89%), Postives = 95/99 (95.96%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVHSANPDVLVILSGL+YD DLSFI+NRPA L+F+GKLVFEVHWYGF++GQTWVTGNPNQVCGRVA DMMR SGFLVDQGYPLFVSE+GVDQRGTNVN
Sbjct:  227 EAVHSANPDVLVILSGLNYDKDLSFIRNRPANLTFTGKLVFEVHWYGFTDGQTWVTGNPNQVCGRVANDMMRTSGFLVDQGYPLFVSEFGVDQRGTNVN 325
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: A0A067K4F9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17827 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.253e-49
Identity = 78/99 (78.79%), Postives = 90/99 (90.91%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVHSANPDVLVILSGL+YD DLSF++NRP  L+F+GKLVFEVHWYGFS+GQ W  GNPNQVCGRV  +MMR SG+L+DQG+PLFVSE+G+DQRGTNVN
Sbjct:  229 EAVHSANPDVLVILSGLNYDKDLSFLRNRPVNLTFTGKLVFEVHWYGFSDGQAWKNGNPNQVCGRVTSNMMRMSGYLLDQGWPLFVSEFGIDQRGTNVN 327
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: B9HTQ3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s05960g PE=3 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 8.358e-49
Identity = 76/99 (76.77%), Postives = 90/99 (90.91%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVHSANPDV+VILSGL+YD DLSF++NRP  L+FSGK+VFEVHWYGF++G+ W +GN NQVCGRV  +MMR SGFL+DQG+PLFVSE+GVDQRGTNVN
Sbjct:  208 EAVHSANPDVIVILSGLNYDKDLSFLRNRPVHLTFSGKIVFEVHWYGFTDGEAWKSGNSNQVCGRVVDNMMRVSGFLLDQGWPLFVSEFGVDQRGTNVN 306
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: B9RMT6_RICCO (Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_1083710 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.129e-48
Identity = 76/99 (76.77%), Postives = 90/99 (90.91%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVHSANPDVLVILSGL+YD D SF++NRP  LSF+GK+VFEVHWYGFS+GQ W +GNPNQVCGRV  ++MR SGFL++QG+P+FVSE+GVDQRGTNVN
Sbjct:  230 EAVHSANPDVLVILSGLNYDKDFSFLRNRPVNLSFTGKVVFEVHWYGFSDGQAWRSGNPNQVCGRVVDNLMRISGFLLEQGWPMFVSEFGVDQRGTNVN 328
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: A0A0D2TR86_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G173600 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.065e-47
Identity = 78/99 (78.79%), Postives = 89/99 (89.90%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVH+ANP+VL+ILSGLS+D DLSFI+NRP  L+FS KLVFE+HWYGFS+GQ WVTGNPN+VCGRV  DM R SGFLVD+GYPLFVSE+GVD RGTNVN
Sbjct:  222 EAVHAANPNVLIILSGLSFDKDLSFIKNRPLILTFSRKLVFEMHWYGFSDGQAWVTGNPNRVCGRVTNDMKRMSGFLVDKGYPLFVSEFGVDLRGTNVN 320
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: B9HLD8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s18380g PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.189e-47
Identity = 76/99 (76.77%), Postives = 89/99 (89.90%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVHSANPDV+VILSGL+YD DLSF++NRP  L+FS K+VFEVHWYGF++GQ W  GNPNQVCGRV  +MMR SGFL+DQG+PLF+SE+GVDQRGTNVN
Sbjct:  230 EAVHSANPDVIVILSGLNYDKDLSFLRNRPVNLTFSRKIVFEVHWYGFTDGQAWKNGNPNQVCGRVVDNMMRISGFLLDQGWPLFMSEFGVDQRGTNVN 328
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: A0A0B0PC71_GOSAR (Endoglucanase E1 OS=Gossypium arboreum GN=F383_09225 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.356e-47
Identity = 76/99 (76.77%), Postives = 89/99 (89.90%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVH+ANP++L+ILSGLS+D DLSFI+NRP  L+FS KLVFE+HWYGF++GQ WVTGNPN+VCGRV  DM R SGFLVD+GYPLFVSE+GVD RGTNVN
Sbjct:  167 EAVHAANPNLLIILSGLSFDKDLSFIKNRPLILTFSRKLVFEMHWYGFTDGQAWVTGNPNRVCGRVTNDMKRMSGFLVDKGYPLFVSEFGVDLRGTNVN 265
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Match: A0A068UYF1_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_74 OS=Coffea canephora GN=GSCOC_T00038134001 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.760e-47
Identity = 74/99 (74.75%), Postives = 88/99 (88.89%), Query Frame = 2 
Query:    2 EAVHSANPDVLVILSGLSYDSDLSFIQNRPAQLSFSGKLVFEVHWYGFSNGQTWVTGNPNQVCGRVAKDMMRRSGFLVDQGYPLFVSEYGVDQRGTNVN 298
            EAVH+ANPDVL+ILSGL+YD D SF+  +P  L+FSGKLV+EVHWYGFS+G+ W TGNPN+VCGR+  DMMR+SGFL+DQGYPLFVSE+GVD RGTNVN
Sbjct:  201 EAVHAANPDVLIILSGLNYDKDFSFLLQKPVNLTFSGKLVYEVHWYGFSDGKAWETGNPNEVCGRLVNDMMRKSGFLLDQGYPLFVSEFGVDLRGTNVN 299
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0MZX5_GOSAR6.136e-62100.00Endoglucanase OS=Gossypium arboreum GN=F383_30508 ... [more]
A0A0D2QFD1_GOSRA5.081e-6096.97Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EEN1_THECC1.209e-5588.89Cellulase protein OS=Theobroma cacao GN=TCM_010637... [more]
A0A067K4F9_JATCU1.253e-4978.79Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9HTQ3_POPTR8.358e-4976.77Uncharacterized protein OS=Populus trichocarpa GN=... [more]
B9RMT6_RICCO5.129e-4876.77Hydrolase, hydrolyzing O-glycosyl compounds, putat... [more]
A0A0D2TR86_GOSRA1.065e-4778.79Uncharacterized protein OS=Gossypium raimondii GN=... [more]
B9HLD8_POPTR1.189e-4776.77Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0B0PC71_GOSAR1.356e-4776.77Endoglucanase E1 OS=Gossypium arboreum GN=F383_092... [more]
A0A068UYF1_COFCA1.760e-4774.75Coffea canephora DH200=94 genomic scaffold, scaffo... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0006124 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013781Glycoside hydrolase, catalytic domainGENE3D3.20.20.80coord: 6..79
e-value: 2.5E-10
score: 39.3
IPR001547Glycoside hydrolase, family 5PFAMPF00150Cellulasecoord: 9..79
e-value: 1.8E-5
score: 24.2
NoneNo IPR availablePANTHERPTHR31263FAMILY NOT NAMEDcoord: 1..83
NoneNo IPR availablePANTHERPTHR31263:SF0CELLULASE (GLYCOSYL HYDROLASE FAMILY 5) PROTEIN-RELATEDcoord: 1..83
IPR017853Glycoside hydrolase superfamilySUPERFAMILY51445(Trans)glycosidasescoord: 2..81

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006124 ID=g.arboreum_cottongen_reftransV1_0006124; Name=g.arboreum_cottongen_reftransV1_0006124; organism=Gossypium arboreum; type=contig; length=299bp
GGAAGCAGTTCACTCAGCAAACCCAGATGTTCTAGTTATACTTTCTGGGT
TGAGTTACGACAGTGACCTGTCATTCATCCAAAATCGACCAGCACAGCTC
AGTTTTAGTGGGAAACTAGTATTTGAGGTGCACTGGTATGGCTTTTCGAA
TGGGCAGACATGGGTAACTGGTAACCCAAACCAAGTGTGTGGCAGAGTGG
CGAAAGACATGATGAGGAGATCAGGGTTTTTGGTGGATCAAGGATATCCC
TTGTTTGTGAGCGAGTATGGGGTGGACCAAAGAGGAACCAATGTAAATG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR013781Glyco_hydro_catalytic_dom
IPR001547Glyco_hydro_5
IPR017853Glycoside_hydrolase_SF
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds