g.arboreum_cottongen_reftransV1_0008455, g.arboreum_cottongen_reftransV1_0008455 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008455
Unique Nameg.arboreum_cottongen_reftransV1_0008455
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0008455:1..396 .
Chr10:112476502..112477509 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0B0NBF1_GOSAR (Lysine-specific demethylase REF6-like protein OS=Gossypium arboreum GN=F383_14553 PE=4 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 2.458e-70
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 3
Query:    3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395
            NGHEPVSRSIVDHDSDSSDSEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR
Sbjct:  704 NGHEPVSRSIVDHDSDSSDSEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 834          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2RPX0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G185200 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.504e-68
Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 3
Query:    3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395
            NGHEPVSRSIVDHDSDSSDSEIFRVKRRSFLKVEKR+GNHTMAS SSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRND+
Sbjct:  703 NGHEPVSRSIVDHDSDSSDSEIFRVKRRSFLKVEKRSGNHTMASKSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDK 833          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2QN03_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G185200 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.513e-68
Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 3
Query:    3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395
            NGHEPVSRSIVDHDSDSSDSEIFRVKRRSFLKVEKR+GNHTMAS SSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRND+
Sbjct:  704 NGHEPVSRSIVDHDSDSSDSEIFRVKRRSFLKVEKRSGNHTMASKSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDK 834          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A061G6M3_THECC (Jumonji domain protein isoform 3 OS=Theobroma cacao GN=TCM_016586 PE=4 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 4.529e-43
Identity = 94/132 (71.21%), Postives = 104/132 (78.79%), Query Frame = 3
Query:    3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN-LPISIKYKKLGNEEAMIRQREHHRNDR 395
            N HEP SRS VD DSD SDSEIFRVKRRSFLK+EKRN N TM+S + EHQGLKRLKKLQHE R GQS  S+  R DEP+RN N  S+ KE+PEN +K+R+GR   LPISIKYKKLGNEE M RQREH R DR
Sbjct:  425 NVHEPESRSTVDQDSDGSDSEIFRVKRRSFLKIEKRNANDTMSSKNCEHQGLKRLKKLQHEGRCGQSTSSEGCRTDEPSRNINSTSDCKEAPENAVKERFGRGGALPISIKYKKLGNEETMSRQREHQRYDR 556          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A061G5V2_THECC (Jumonji domain protein isoform 2 OS=Theobroma cacao GN=TCM_016586 PE=4 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.547e-42
Identity = 94/132 (71.21%), Postives = 104/132 (78.79%), Query Frame = 3
Query:    3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN-LPISIKYKKLGNEEAMIRQREHHRNDR 395
            N HEP SRS VD DSD SDSEIFRVKRRSFLK+EKRN N TM+S + EHQGLKRLKKLQHE R GQS  S+  R DEP+RN N  S+ KE+PEN +K+R+GR   LPISIKYKKLGNEE M RQREH R DR
Sbjct:  703 NVHEPESRSTVDQDSDGSDSEIFRVKRRSFLKIEKRNANDTMSSKNCEHQGLKRLKKLQHEGRCGQSTSSEGCRTDEPSRNINSTSDCKEAPENAVKERFGRGGALPISIKYKKLGNEETMSRQREHQRYDR 834          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A061GDV3_THECC (Jumonji domain protein isoform 1 OS=Theobroma cacao GN=TCM_016586 PE=4 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.554e-42
Identity = 94/132 (71.21%), Postives = 104/132 (78.79%), Query Frame = 3
Query:    3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN-LPISIKYKKLGNEEAMIRQREHHRNDR 395
            N HEP SRS VD DSD SDSEIFRVKRRSFLK+EKRN N TM+S + EHQGLKRLKKLQHE R GQS  S+  R DEP+RN N  S+ KE+PEN +K+R+GR   LPISIKYKKLGNEE M RQREH R DR
Sbjct:  704 NVHEPESRSTVDQDSDGSDSEIFRVKRRSFLKIEKRNANDTMSSKNCEHQGLKRLKKLQHEGRCGQSTSSEGCRTDEPSRNINSTSDCKEAPENAVKERFGRGGALPISIKYKKLGNEETMSRQREHQRYDR 835          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0B0PWN1_GOSAR (Lysine-specific demethylase REF6-like protein OS=Gossypium arboreum GN=F383_12117 PE=4 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.775e-34
Identity = 90/136 (66.18%), Postives = 105/136 (77.21%), Query Frame = 3
Query:    3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMP--SDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNL--PISIKYKKLGNEEAM-IRQREHHRNDR 395
            N H+PVSRSIVD +SDSSDS IFRVKR  F KVEKR GN T++S +SEHQ  KRLKKLQHE R G+ +   S+C RNDEPNRNTN +S+ KE+ EN +KDR GR  L  PISIKYKK+G+E  M  R+REHHRNDR
Sbjct:  611 NVHDPVSRSIVDENSDSSDSPIFRVKR-PFSKVEKRFGNDTISSKNSEHQAFKRLKKLQHEGRCGRPVAYESECCRNDEPNRNTNCSSDSKEALENAVKDRLGRGTLPIPISIKYKKMGSEAGMSSRRREHHRNDR 745          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: U5GS16_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02020g PE=4 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 8.589e-34
Identity = 72/112 (64.29%), Postives = 84/112 (75.00%), Query Frame = 3
Query:   63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGR-SNLPISIKYKKLGNEEAMIRQREHHRNDR 395
            EIFRVKRRS LKVEKR  N   +S + EHQGLKRLKKLQ E R GQ+  S+C R DE NR++   S+YKE+PE+  KDR+ R S +PISIK+KKL NEEAM RQRE HR DR
Sbjct:  699 EIFRVKRRSSLKVEKRVVNDASSSKNYEHQGLKRLKKLQPEGRYGQTTSSECCRTDESNRSSTSGSDYKEAPESASKDRFARGSIIPISIKFKKLINEEAMSRQREQHRRDR 810          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2RKA3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G224500 PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.920e-31
Identity = 88/134 (65.67%), Postives = 102/134 (76.12%), Query Frame = 3
Query:    3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMP--SDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNL--PISIKYKKLGNEEAMIR-QREHHRN 389
            N H+PVSRSIVD +SDSSDS IFRVKR  F KVEKR GN T++S +SEHQG KRLKKLQHE R G+ +   S+C RNDEPNRNTN +S+ K + EN +KDR GR  L  PISIKYKK+G+E  M   QREHHRN
Sbjct:  686 NVHDPVSRSIVDENSDSSDSAIFRVKR-PFSKVEKRFGNDTISSKNSEHQGFKRLKKLQHEGRCGRPVAYGSECCRNDEPNRNTNCSSDSK-ALENAVKDRLGRGTLPIPISIKYKKMGSEAGMSSGQREHHRN 817          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2PZS9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G224500 PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.942e-31
Identity = 88/134 (65.67%), Postives = 102/134 (76.12%), Query Frame = 3
Query:    3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMP--SDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNL--PISIKYKKLGNEEAMIR-QREHHRN 389
            N H+PVSRSIVD +SDSSDS IFRVKR  F KVEKR GN T++S +SEHQG KRLKKLQHE R G+ +   S+C RNDEPNRNTN +S+ K + EN +KDR GR  L  PISIKYKK+G+E  M   QREHHRN
Sbjct:  685 NVHDPVSRSIVDENSDSSDSAIFRVKR-PFSKVEKRFGNDTISSKNSEHQGFKRLKKLQHEGRCGRPVAYGSECCRNDEPNRNTNCSSDSK-ALENAVKDRLGRGTLPIPISIKYKKMGSEAGMSSGQREHHRN 816          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NBF1_GOSAR2.458e-70100.00Lysine-specific demethylase REF6-like protein OS=G... [more]
A0A0D2RPX0_GOSRA1.504e-6897.71Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QN03_GOSRA1.513e-6897.71Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061G6M3_THECC4.529e-4371.21Jumonji domain protein isoform 3 OS=Theobroma caca... [more]
A0A061G5V2_THECC1.547e-4271.21Jumonji domain protein isoform 2 OS=Theobroma caca... [more]
A0A061GDV3_THECC1.554e-4271.21Jumonji domain protein isoform 1 OS=Theobroma caca... [more]
A0A0B0PWN1_GOSAR2.775e-3466.18Lysine-specific demethylase REF6-like protein OS=G... [more]
U5GS16_POPTR8.589e-3464.29Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0D2RKA3_GOSRA2.920e-3165.67Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2PZS9_GOSRA2.942e-3165.67Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008455 ID=g.arboreum_cottongen_reftransV1_0008455; Name=g.arboreum_cottongen_reftransV1_0008455; organism=Gossypium arboreum; type=contig; length=396bp
ATAATGGTCATGAACCAGTGAGTAGGTCTATAGTCGACCATGACAGTGAT
AGTTCTGATTCAGAGATATTTAGGGTTAAACGGCGTTCTTTTTTGAAGGT
TGAGAAAAGAAATGGCAACCACACCATGGCATCAAATAGCTCTGAACACC
AGGGGCTCAAGCGATTAAAGAAACTCCAACATGAAAAAAGAAGTGGGCAA
TCAATGCCATCTGATTGCTCTAGAAACGATGAACCAAATCGTAACACCAA
TCGTGCTTCTAATTACAAAGAATCCCCAGAGAACACTTTGAAGGACAGAT
ATGGAAGAAGCAACCTTCCCATCTCCATAAAGTACAAGAAATTGGGAAAT
GAGGAAGCAATGATTAGGCAACGAGAGCACCATAGAAACGACAGGT
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