g.arboreum_cottongen_reftransV1_0019901, g.arboreum_cottongen_reftransV1_0019901 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019901
Unique Nameg.arboreum_cottongen_reftransV1_0019901
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length862
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0019901:1..862 .
Chr9:84760797..84762925 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0D2UJP7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G042300 PE=4 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.590e-61
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = -2 
Query:  241 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 618
            TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLK+KTKIDAKMPKKPPTAFFYFLEDFRK+FQEQNP IKSMRDIGKACGEKWKTMTYEEKVKYYDIAT KRAEFDRAMAEYIKRK
Sbjct:   26 TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLKKKTKIDAKMPKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYEEKVKYYDIATGKRAEFDRAMAEYIKRK 151
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0D2REF3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G042300 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.832e-61
Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = -2 
Query:  241 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 618
            TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLK+KTKIDAKMPKKPPTAFFYFLEDFRK+FQEQNP IKSMRDIGKACGEKWKTMTYEEKVKYYDIAT KRAEFDRAMAEYIKRK
Sbjct:   26 TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLKKKTKIDAKMPKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYEEKVKYYDIATGKRAEFDRAMAEYIKRK 151
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A061GEA9_THECC (HMG-box DNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_029514 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.653e-57
Identity = 105/127 (82.68%), Postives = 115/127 (90.55%), Query Frame = -2 
Query:  241 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXX-XXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 618
            T SN +M LRVKSSEKMK++A++SVVSEREKR  SKSR    + K+ T+IDAKMPKKPPTAFFYFLEDFRKEFQEQNP IKSMRDIG+ACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA+YIKRK
Sbjct:   26 TPSNQKMVLRVKSSEKMKRSAQQSVVSEREKRRTSKSRPKSKQKKKNTRIDAKMPKKPPTAFFYFLEDFRKEFQEQNPDIKSMRDIGRACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 152
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0D2ULQ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G042300 PE=4 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.663e-55
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = -2 
Query:  241 MALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 600
            MALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLK+KTKIDAKMPKKPPTAFFYFLEDFRK+FQEQNP IKSMRDIGKACGEKWKTMTYEEKVKYYDIAT KRAEFDRAMAEYIKRK
Sbjct:    1 MALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLKKKTKIDAKMPKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYEEKVKYYDIATGKRAEFDRAMAEYIKRK 120
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: I3S5Q5_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.825e-46
Identity = 80/125 (64.00%), Postives = 98/125 (78.40%), Query Frame = -2 
Query:  244 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 618
            +AS+ ++ LRVKSSE+MK++A+++          +K     +   K +IDA  PKKPPTAFFYFLEDFRKEFQ QNP +K+MRDIGK+CGEKWKTMTYEEKV+YYDIATEKRAEFDRAM EY K+
Sbjct:   25 SASSRKLVLRVKSSEQMKRSAQQT--------KSTKKPKAKQKTSKQRIDANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDIATEKRAEFDRAMTEYNKK 141
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A059CC67_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00306 PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.136e-46
Identity = 84/122 (68.85%), Postives = 97/122 (79.51%), Query Frame = -2 
Query:  241 MALRVKSSEKMKKTA--EESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 600
            M LRVKSSEKMK+ A        E   +     +  ++ K+  K+DAKMPKKPPTAFFYFLEDFRK++QEQNP +KSMRDIGKACGEKWKTMTYEEKV+YYDIATEKR EFD+AMAEY+KRK
Sbjct:   29 MVLRVKSSEKMKRLALMSRESEEEWRPKSGRSVKTAARGKKNVKLDAKMPKKPPTAFFYFLEDFRKDYQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRREFDKAMAEYVKRK 150
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A067GRT5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031573mg PE=4 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.052e-44
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = -2 
Query:  241 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 477
            K+D+KMPKKPPTAFFYFLEDFRK FQEQNP IKSMR IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA+YIKRK
Sbjct:   61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: V4TQU5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017037mg PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.021e-43
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = -2 
Query:  241 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 477
            K+D+KMPKKPPTAFFYFLEDFRK FQEQNP IKSMR IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA+YIKRK
Sbjct:   61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: V4UA74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017037mg PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.225e-43
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = -2 
Query:  241 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKRK 477
            K+D+KMPKKPPTAFFYFLEDFRK FQEQNP IKSMR IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA+YIKRK
Sbjct:   40 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 118
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Match: A0A0D2SZH9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G042300 PE=4 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.738e-42
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = -2 
Query:  322 TASNHQMALRVKSSEKMKKTAEESVVXXXXXXXXXXXXXXXXXXXKTKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYE 618
            TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLK+KTKIDAKMPKKPPTAFFYFLEDFRK+FQEQNP IKSMRDIGKACGEKWKTMTYE
Sbjct:   26 TASNHQMALRVKSSEKMKKTAEESVVSEREKRPKSKSRPKSKLKKKTKIDAKMPKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYE 124
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMG14_ARATH (High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.770e-37
Identity = 60/77 (77.92%), Postives = 68/77 (88.31%), Query Frame = -2 
Query:  244 IDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 474
            +  KMPKKP TAFF+FL+DFRK++QE+NP +KSMR+IGK CGEKWKTMTYEEKVKYYDIATEKR EF RAM EY KR
Sbjct:   58 LQTKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYTKR 134
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB4_ARATH (High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.311e-17
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -2 
Query:  253 TKIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEY 480
            TK D   PK+PP+AFF FLEDFRKEF   NP  KS+  +GKA G +WK MT E+K  Y   A  ++ E+ + + +Y
Sbjct:   28 TKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQY 103
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB5_ARATH (High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.488e-16
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = -2 
Query:  253 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEY 471
            D   PKKPP+ FF FL+DFRKEF   NP  KS+ ++G+A G+KWKTMT EE+  +   +  K+ E+   M +Y
Sbjct:   30 DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQY 102
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB1_ARATH (High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.821e-16
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = -2 
Query:  247 KIDAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIK 477
            K D   PK+ P+AFF FLEDFR  F+++NP +K++  +GKA G+KWK+M+  EK  Y + A +++AE+++ M  Y K
Sbjct:   47 KKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNK 123
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.850e-16
Identity = 33/76 (43.42%), Postives = 54/76 (71.05%), Query Frame = -2 
Query:  244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471
            D   PK+PP+AFF F+ DFR+++++ +P  KS+  +GKACGE+WK+++ EEK  Y D A +K+ E++  +  Y K+
Sbjct:   41 DPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.015e-15
Identity = 33/75 (44.00%), Postives = 53/75 (70.67%), Query Frame = -2 
Query:  247 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIK 471
            D   PK+ P+AFF F+E+FRKEF+E+NP  KS+  +GKA G++WK+++  +K  Y   A + + E+++A+A Y K
Sbjct:   37 DPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNK 111
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.635e-15
Identity = 32/75 (42.67%), Postives = 52/75 (69.33%), Query Frame = -2 
Query:  247 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIK 471
            D   PK+ P+AFF F+ +FR+EF+++NP  KS+  +GKA GE+WK+++  EK  Y   A + + E+++A+A Y K
Sbjct:   38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNK 112
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.401e-15
Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = -2 
Query:  244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471
            D   PK+PP+AFF F+EDFRK ++E++P  KS+  +GKA G+KWK +T  EK  +   A +++ E+++ +  Y K+
Sbjct:   32 DPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKK 107
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGB2_ARATH (High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.102e-14
Identity = 31/76 (40.79%), Postives = 52/76 (68.42%), Query Frame = -2 
Query:  244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471
            D   PK+P +AFF F+EDFR+ F+++NP  KS+  +GKA G+KWK+++  EK  Y   A +++ E+++ +  Y K+
Sbjct:   34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKK 109
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.553e-14
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = -2 
Query:  244 DAKMPKKPPTAFFYFLEDFRKEFQEQNPGIKSMRDIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMAEYIKR 471
            D   PK+PP+AFF F+E+FRK F +++P  K++  +GKA G KWKTM+  EK  Y   + +++ E+++ M  Y K+
Sbjct:   40 DPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKK 115
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2UJP7_GOSRA1.590e-6196.83Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2REF3_GOSRA1.832e-6196.83Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GEA9_THECC5.653e-5782.68HMG-box DNA-binding family protein isoform 1 OS=Th... [more]
A0A0D2ULQ9_GOSRA2.663e-5596.67Uncharacterized protein OS=Gossypium raimondii GN=... [more]
I3S5Q5_LOTJA5.825e-4664.00Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
A0A059CC67_EUCGR8.136e-4668.85Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A067GRT5_CITSI5.052e-4492.41Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4TQU5_9ROSI1.021e-4392.41Uncharacterized protein OS=Citrus clementina GN=CI... [more]
V4UA74_9ROSI1.225e-4392.41Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A0D2SZH9_GOSRA1.738e-4296.97Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019901 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
HMG14_ARATH2.770e-3777.92High mobility group B protein 14 OS=Arabidopsis th... [more]
HMGB4_ARATH3.311e-1748.68High mobility group B protein 4 OS=Arabidopsis tha... [more]
HMGB5_ARATH1.488e-1647.95High mobility group B protein 5 OS=Arabidopsis tha... [more]
HMGB1_ARATH1.821e-1645.45High mobility group B protein 1 OS=Arabidopsis tha... [more]
HMGL_VICFA1.850e-1643.42HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE1.015e-1544.00DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT5.635e-1542.67HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGL_IPONI7.401e-1542.11HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGB2_ARATH2.102e-1440.79High mobility group B protein 2 OS=Arabidopsis tha... [more]
HMGL_SOYBN3.553e-1442.11HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 96..167
e-value: 9.4E-22
score: 88.3
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 97..165
e-value: 2.4E-19
score: 69.4
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 96..169
e-value: 3.8E-20
score: 71.7
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 97..166
score: 17.649
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 81..167
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 80..185
coord: 11..23
NoneNo IPR availablePANTHERPTHR13711:SF200HIGH MOBILITY GROUP B PROTEIN 14coord: 80..185
coord: 11..23
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..22
score: 0.483

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019901 ID=g.arboreum_cottongen_reftransV1_0019901; Name=g.arboreum_cottongen_reftransV1_0019901; organism=Gossypium arboreum; type=contig; length=862bp
GTCAGATTAACGTTCAAGTCTGCGTGACAATAATATATATGTAAGAACTA
TCTCCAAGCAGTGATTTACACAAAAATGATACAGGGGTGAACATATTTGC
CTACATTAATATGCTACTCATATAAGTCATAATTAAACCACTACATCTAT
GCATTTCCTGGTACAACACCACCTAAGGTTTATATATATTTATTCATCAA
ACTCCGAATCATCTTCGGTTTCTTCATCTTCGCCACTTTCCTTTCTTTTA
ATGTATTCCGCCATGGCTCTGTCAAACTCTGCTCGTTTCTCGGTTGCAAT
ATCGTAATATTTAACTTTCTCCTCGTATGTCATTGTCTTCCACTTCTCAC
CACATGCCTTCCCAATATCGCGCATTGACTTGATACCCGGATTCTGCTCT
TGAAATTCCTTACGAAAATCCTCCAAGAAGTAAAAGAAAGCAGTGGGGGG
TTTCTTAGGCATTTTAGCATCGATTTTTGTTTTCCTCTTCAGCTTCGATT
TGGGTCTTGACTTCGACTTGGGTCTCTTTTCTCTCTCGCTAACAACACTC
TCTTCAGCTGTCTTCTTCATTTTCTCACTTGATTTTACCCTTAACGCCAT
TTGATGATTGGAGGCTGTTGATGGGTTCTTAGCGGAAGTAACGGAGGTTG
AAGATGAACGATCATTTTTCGACTTTGAAGCTTTCTTCGCCATTTTTTTT
CTCCTTTCTATTTCTAAGACAGGTAGGAGATGGAGACAAATACCCAGAGC
TTGTGCGTTGCTTAGTGTTGGCTGGCTCTCACCAGTGAAGCAGTTACCAC
CACAACTCGACTGTTTCCGGTGGGAAGGAGCTGGGATTTGGACTTCCACG
GGTGAGGGTCAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom