g.arboreum_cottongen_reftransV1_0017515, g.arboreum_cottongen_reftransV1_0017515 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0017515
Unique Nameg.arboreum_cottongen_reftransV1_0017515
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr4chromosomeg.arboreum_cottongen_reftransV1_0017515:1..455 .
Chr4:15595324..15596688 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A0A0B0MWS7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_09654 PE=4 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 8.211e-104
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK
Sbjct:  129 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 279
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A0A0B0MRL2_GOSAR (Glucan endo-1,3-beta-glucosidase B OS=Gossypium arboreum GN=F383_09654 PE=4 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 1.061e-103
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK
Sbjct:  129 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 279
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A0A0D2PJL7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G355500 PE=4 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 9.686e-103
Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGVS FFLFVEGKAASPNVSKVLE IPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDD+K
Sbjct:  132 AGLEQTLPWIFYHKVIGVSAFFLFVEGKAASPNVSKVLELIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDIK 282
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A0A0D2R4P7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G355500 PE=4 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 2.087e-102
Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGVS FFLFVEGKAASPNVSKVLE IPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDD+K
Sbjct:  132 AGLEQTLPWIFYHKVIGVSAFFLFVEGKAASPNVSKVLELIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDIK 282
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A0A0D2SW18_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G355500 PE=4 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 3.706e-101
Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGVS FFLFVEGKAASPNVSKVLE IPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDD+K
Sbjct:  132 AGLEQTLPWIFYHKVIGVSAFFLFVEGKAASPNVSKVLELIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDIK 282
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A0A061EXH6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024494 PE=4 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 9.417e-101
Identity = 146/151 (96.69%), Postives = 149/151 (98.68%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEM+IVMARDAGMDWIIHLDTDELIHP GAREYSLRQLL+ VPGNVDMVVFPNYESSVERDD+K
Sbjct:  128 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWIIHLDTDELIHPAGAREYSLRQLLSDVPGNVDMVVFPNYESSVERDDIK 278
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: B9IHV8_POPTR (GCN5-related N-acetyltransferase family protein OS=Populus trichocarpa GN=POPTR_0016s04140g PE=4 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 8.256e-98
Identity = 140/151 (92.72%), Postives = 148/151 (98.01%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKV+GVSTFFLFVEGKAASP VSKVLE+IPGVKVIYRT+ELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEM+IVMAR+AGMDWIIHLDTDELIHP GAREYSLRQLL+ VPGNVDMV+FPNYESSVERDD+K
Sbjct:  120 AGLEQTLPWIFYHKVMGVSTFFLFVEGKAASPTVSKVLETIPGVKVIYRTRELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMAIVMAREAGMDWIIHLDTDELIHPAGAREYSLRQLLSDVPGNVDMVIFPNYESSVERDDIK 270
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A0A0D2SQ17_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G355500 PE=4 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 9.970e-98
Identity = 146/151 (96.69%), Postives = 147/151 (97.35%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGVS FFLFVEGKAASPNVSKVLE IPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVM  DAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDD+K
Sbjct:  132 AGLEQTLPWIFYHKVIGVSAFFLFVEGKAASPNVSKVLELIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVM--DAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDIK 280
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: A0A059DH58_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02295 PE=4 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 2.124e-97
Identity = 141/151 (93.38%), Postives = 147/151 (97.35%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQ LPWIFYHKVIGVSTFFLFVEGKAASP+VSKVLESIPGVKVIYRT+ELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEM+IVMARDAGMDWIIHLDTDELI+P G REYS+RQLLA VPGNVDMV+FPNYESSVERDDVK
Sbjct:   69 AGLEQILPWIFYHKVIGVSTFFLFVEGKAASPDVSKVLESIPGVKVIYRTRELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWIIHLDTDELIYPAGNREYSVRQLLADVPGNVDMVIFPNYESSVERDDVK 219
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Match: V4TFQ1_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100311592mg PE=4 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 5.055e-96
Identity = 134/151 (88.74%), Postives = 143/151 (94.70%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            A L+Q LPW+FYHKVIGV+TFFLFVEGKAASP VSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+IVMARD GMDWI+HLDTDELIHP G REYSLRQLL  VPGNVDMV+FPNYESS+ERDD+K
Sbjct:   39 ASLDQILPWMFYHKVIGVTTFFLFVEGKAASPEVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDEGMDWILHLDTDELIHPAGGREYSLRQLLLDVPGNVDMVIFPNYESSIERDDIK 189
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy Swiss-Prot
Match: ELD1_ARATH (Glycosyltransferase-like KOBITO 1 OS=Arabidopsis thaliana GN=ELD1 PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 3.760e-94
Identity = 132/151 (87.42%), Postives = 146/151 (96.69%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGL+Q LPW+FYHKV+GVSTFFLFVEGKAA+P++SKVLESIPGVKVIYRTKELEE+QAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+IVMARDAGMDWI+HLDTDELI+P GAREYSLR+LL  VP NVDMV+FPNYESSVERDD+K
Sbjct:  138 AGLDQILPWMFYHKVLGVSTFFLFVEGKAATPSISKVLESIPGVKVIYRTKELEEKQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWILHLDTDELIYPAGAREYSLRRLLLDVPPNVDMVIFPNYESSVERDDIK 288
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy Swiss-Prot
Match: GLYT7_ARATH (Glycosyltransferase-like At3g57200 OS=Arabidopsis thaliana GN=At3g57200 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.272e-90
Identity = 126/151 (83.44%), Postives = 143/151 (94.70%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWI++HKVIGVSTF+LFVEGKAASPNVS+VLE+IPGVKVIYRTKELEE+QAKSRIWNETWL+SFFYKPCNYELFVKQSLNMEM+I MA+DAGM+WIIHLDTDELIHP G  EYSLR+LL  +  +VD+V+FPNYESSVERDD++
Sbjct:  124 AGLEQTLPWIYFHKVIGVSTFYLFVEGKAASPNVSRVLETIPGVKVIYRTKELEEKQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAITMAQDAGMEWIIHLDTDELIHPSGTHEYSLRKLLGNISADVDVVIFPNYESSVERDDIR 274
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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy Swiss-Prot
Match: GLYT8_ARATH (Glycosyltransferase-like At2g41451 OS=Arabidopsis thaliana GN=At2g41451 PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 9.295e-90
Identity = 125/151 (82.78%), Postives = 137/151 (90.73%), Query Frame = 3 
Query:    3 AGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMSIVMARDAGMDWIIHLDTDELIHPVGAREYSLRQLLAGVPGNVDMVVFPNYESSVERDDVK 455
            AGLEQTLPWIFYHKVIGV TF+LFVEG AASPNVS+VLE+IPGV VIYRT+ELEE+QAKSRIWNETWL  FFYKPCNYELFVKQ+LNMEM+I MARDAGMDWI+HLDTDEL+HP G REYSLR LL  VP +VD V+F NYESSVERDD+K
Sbjct:  105 AGLEQTLPWIFYHKVIGVETFYLFVEGTAASPNVSRVLETIPGVNVIYRTRELEEEQAKSRIWNETWLEKFFYKPCNYELFVKQNLNMEMAITMARDAGMDWILHLDTDELVHPSGTREYSLRNLLRDVPADVDEVIFTNYESSVERDDIK 255
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0MWS7_GOSAR8.211e-104100.00Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0B0MRL2_GOSAR1.061e-103100.00Glucan endo-1,3-beta-glucosidase B OS=Gossypium ar... [more]
A0A0D2PJL7_GOSRA9.686e-10398.01Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2R4P7_GOSRA2.087e-10298.01Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SW18_GOSRA3.706e-10198.01Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EXH6_THECC9.417e-10196.69Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
B9IHV8_POPTR8.256e-9892.72GCN5-related N-acetyltransferase family protein OS... [more]
A0A0D2SQ17_GOSRA9.970e-9896.69Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A059DH58_EUCGR2.124e-9793.38Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
V4TFQ1_9ROSI5.055e-9688.74Uncharacterized protein (Fragment) OS=Citrus cleme... [more]

Pages

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BLAST of g.arboreum_cottongen_reftransV1_0017515 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ELD1_ARATH3.760e-9487.42Glycosyltransferase-like KOBITO 1 OS=Arabidopsis t... [more]
GLYT7_ARATH3.272e-9083.44Glycosyltransferase-like At3g57200 OS=Arabidopsis ... [more]
GLYT8_ARATH9.295e-9082.78Glycosyltransferase-like At2g41451 OS=Arabidopsis ... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10774:SF61ELONGATION DEFECTIVE 1coord: 3..84
NoneNo IPR availablePANTHERPTHR10774EXTENDED SYNAPTOTAGMIN-RELATEDcoord: 3..84

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0017515 ID=g.arboreum_cottongen_reftransV1_0017515; Name=g.arboreum_cottongen_reftransV1_0017515; organism=Gossypium arboreum; type=contig; length=455bp
CTGCAGGATTAGAACAGACACTACCATGGATCTTTTATCACAAGGTTATT
GGAGTTTCAACCTTTTTCCTTTTTGTTGAGGGGAAGGCTGCCTCTCCTAA
TGTATCTAAAGTCCTAGAATCGATTCCAGGGGTGAAAGTGATATACAGAA
CAAAAGAATTAGAGGAACAACAAGCTAAAAGTCGGATTTGGAATGAGACC
TGGTTGGCAAGTTTCTTCTACAAACCATGTAACTACGAGTTGTTTGTGAA
GCAATCCCTTAATATGGAAATGTCTATTGTCATGGCAAGGGATGCTGGCA
TGGATTGGATTATTCATCTTGACACCGATGAGCTTATACATCCCGTGGGT
GCTCGCGAGTACTCTTTGAGACAATTATTGGCAGGTGTACCTGGAAATGT
TGATATGGTTGTCTTCCCAAATTATGAAAGCAGTGTTGAGCGGGATGATG
TCAAG
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