g.arboreum_cottongen_reftransV1_0010449, g.arboreum_cottongen_reftransV1_0010449 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0B0Q2G0_GOSAR (Autophagy-related protein 2 OS=Gossypium arboreum GN=F383_05424 PE=4 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 6.278e-60 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = -2 Query: 1 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSCH 303 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSCH Sbjct: 1512 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSCH 1612
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0B0PYF9_GOSAR (Autophagy-related protein 2 OS=Gossypium arboreum GN=F383_05424 PE=4 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 8.743e-60 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = -2 Query: 1 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSCH 303 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSCH Sbjct: 1512 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSCH 1612
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0D2SJ86_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G238500 PE=4 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.781e-56 Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = -2 Query: 7 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 303 SVSKLSLSVH+FHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLP+RLQLHQSQLDFLISFFGEKSTSLDQTTS Sbjct: 1584 SVSKLSLSVHDFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPMRLQLHQSQLDFLISFFGEKSTSLDQTTS 1682
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0D2PUZ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G238500 PE=4 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.876e-56 Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = -2 Query: 7 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 303 SVSKLSLSVH+FHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLP+RLQLHQSQLDFLISFFGEKSTSLDQTTS Sbjct: 1584 SVSKLSLSVHDFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPMRLQLHQSQLDFLISFFGEKSTSLDQTTS 1682
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0D2SJ91_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G238500 PE=4 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 1.964e-56 Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = -2 Query: 7 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 303 SVSKLSLSVH+FHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLP+RLQLHQSQLDFLISFFGEKSTSLDQTTS Sbjct: 1173 SVSKLSLSVHDFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPMRLQLHQSQLDFLISFFGEKSTSLDQTTS 1271
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0D2RHA7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G238500 PE=4 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 2.102e-56 Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = -2 Query: 7 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 303 SVSKLSLSVH+FHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLP+RLQLHQSQLDFLISFFGEKSTSLDQTTS Sbjct: 1584 SVSKLSLSVHDFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPMRLQLHQSQLDFLISFFGEKSTSLDQTTS 1682
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A061E7L8_THECC (Autophagy 2, putative isoform 3 OS=Theobroma cacao GN=TCM_007042 PE=4 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 9.813e-50 Identity = 85/100 (85.00%), Postives = 93/100 (93.00%), Query Frame = -2 Query: 4 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSC 303 SVSKLSLSVH+FHLYD+ST+APWKLVL YYDSK HPRESSSKAFKLDLEAVRPDP TPLEEYRLRIA LP+ L LHQSQLDFLISFFGE+S+S+DQ+T C Sbjct: 1059 SVSKLSLSVHDFHLYDESTNAPWKLVLGYYDSKGHPRESSSKAFKLDLEAVRPDPFTPLEEYRLRIAFLPMLLHLHQSQLDFLISFFGERSSSIDQSTGC 1158
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A061E1P1_THECC (Autophagy 2, putative isoform 1 OS=Theobroma cacao GN=TCM_007042 PE=4 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 1.008e-49 Identity = 85/100 (85.00%), Postives = 93/100 (93.00%), Query Frame = -2 Query: 4 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSC 303 SVSKLSLSVH+FHLYD+ST+APWKLVL YYDSK HPRESSSKAFKLDLEAVRPDP TPLEEYRLRIA LP+ L LHQSQLDFLISFFGE+S+S+DQ+T C Sbjct: 1591 SVSKLSLSVHDFHLYDESTNAPWKLVLGYYDSKGHPRESSSKAFKLDLEAVRPDPFTPLEEYRLRIAFLPMLLHLHQSQLDFLISFFGERSSSIDQSTGC 1690
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: W9SML8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027544 PE=4 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.131e-45 Identity = 79/100 (79.00%), Postives = 88/100 (88.00%), Query Frame = -2 Query: 1 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSCH 300 VSKLSLSV +FHLYD DAPWKLVL YYDSK+HPR+SSSKAFKLDLEAVRPDP PLEEYRL+IA LP+RL LHQSQLDFLISFFG KS+ +DQ++ CH Sbjct: 1602 VSKLSLSVQDFHLYDMRRDAPWKLVLGYYDSKNHPRKSSSKAFKLDLEAVRPDPLIPLEEYRLQIAFLPMRLHLHQSQLDFLISFFGAKSSPVDQSSGCH 1701
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A5ALG6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016602 PE=4 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 4.108e-45 Identity = 81/101 (80.20%), Postives = 88/101 (87.13%), Query Frame = -2 Query: 1 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS-CH 300 VSKLSL + +FHLYD S DAPWKLVL YY SKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIA+LPI L LHQ QLDFL+SFFG K+ S+DQ+ S CH Sbjct: 1126 VSKLSLFIKDFHLYDNSRDAPWKLVLGYYHSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIAVLPILLHLHQGQLDFLVSFFGGKNQSVDQSPSHCH 1226
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_DEBHA (Autophagy-related protein 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ATG2 PE=3 SV=2) HSP 1 Score: 52.7582 bits (125), Expect = 1.453e-7 Identity = 29/93 (31.18%), Postives = 45/93 (48.39%), Query Frame = -2 Query: 19 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLD 297 + + L + + +YD ++ W L Y +S RE + K + VRP+P E + I++LPIRL + Q LDF I FF K + Sbjct: 1406 NSIDLRIEDIDIYDNIPNSTWNKFLSYMNSLGE-REIGTSMLKASITNVRPNPELCSTEAMIDISILPIRLHVDQDALDFFIRFFDFKDKRFE 1497
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_MAGO7 (Autophagy-related protein 2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ATG2 PE=3 SV=2) HSP 1 Score: 51.6026 bits (122), Expect = 3.853e-7 Identity = 30/97 (30.93%), Postives = 46/97 (47.42%), Query Frame = -2 Query: 7 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 297 S + + + + +YD + WK YD PRE L + VRP EE + + +LP+RL + Q LDF+ FFG K ++ T+S Sbjct: 1701 SLIRVHIRDLDVYDHVPTSTWKR-FAMYDEDHGPREMGVPMVDLKVRIVRPVLDVTAEEIVMFVNVLPLRLHVDQDALDFITRFFGFKDDTIKTTSS 1796
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_ASPCL (Autophagy-related protein 2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=atg2 PE=3 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 7.410e-7 Identity = 29/85 (34.12%), Postives = 40/85 (47.06%), Query Frame = -2 Query: 43 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFF 297 S L + V + ++D + WK Y RES + L++ VRP P E L+ LLP+RL + Q LDFL FF Sbjct: 1755 SSLDVRVRDLEIFDHVPTSTWKKFATYMQEAGE-RESGASMVHLEILTVRPVPELAASEIVLKATLLPLRLHVDQDALDFLCRFF 1838
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_NEUCR (Autophagy-related protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=apg-2 PE=3 SV=2) HSP 1 Score: 50.447 bits (119), Expect = 7.864e-7 Identity = 25/87 (28.74%), Postives = 45/87 (51.72%), Query Frame = -2 Query: 43 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFF 303 +++ + + +H+ ++D + WK YD RE S L++ V+P P P E +++ +LP+RL + Q LDF+ FF Sbjct: 1654 TINTIDVRIHDLDVFDHIRTSTWKK-FAMYDIDAGERELSKHMVHLEVLNVKPVPDLPATELVVKVNILPLRLHVDQDALDFITRFF 1739 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010449 ID=g.arboreum_cottongen_reftransV1_0010449; Name=g.arboreum_cottongen_reftransV1_0010449; organism=Gossypium arboreum; type=contig; length=304bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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