g.arboreum_cottongen_reftransV1_0021561, g.arboreum_cottongen_reftransV1_0021561 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0021561
Unique Name	g.arboreum_cottongen_reftransV1_0021561
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	2287

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: A0A0B0N8G3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_15958 PE=4 SV=1)

HSP 1 Score: 894.804 bits (2311), Expect = 0.000e+0
Identity = 506/536 (94.40%), Postives = 520/536 (97.01%), Query Frame = -2

Query:  553 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQAQLSAGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGSI 2160
            MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQAQLSAGFQAQYQLSQAQALAQAQSKAQAQAQAHAQLQAHLQAQGLSLNQAQNAGFGTLGSSSPSMSTPGSASAKRILQRPPMRPPGVPMMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQ+P DP+ FNCDAQL KVFGE++VKFTMV  KISQHLS PPPIHLEHK+KLSGNSP GN CYDVLVD+PFPIQRELSALL+N EKSKEI+ CDEAICA IRKIH+H RRRAFFLGFSQSPVEFINAL++SQS D+K+VAGE SRS+EKERRSDFFNQ WVEDAVIRYLNRKP AGSDAPGSI
Sbjct:    1 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQAQLSAGFQAQYQLSQAQALAQAQSKAQAQAQAHAQLQAHLQAQGLSLNQAQNAGFGTLGSSSPSMSTPGSASAKRILQRPPMRPPGVPMMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQSPNDPTSFNCDAQLHKVFGEEKVKFTMVPLKISQHLSRPPPIHLEHKVKLSGNSPVGNVCYDVLVDLPFPIQRELSALLSNAEKSKEIETCDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSLDVKLVAGEASRSSEKERRSDFFNQPWVEDAVIRYLNRKPTAGSDAPGSI 536

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BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: A0A0D2QWK6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G270700 PE=4 SV=1)

HSP 1 Score: 885.174 bits (2286), Expect = 0.000e+0
Identity = 503/536 (93.84%), Postives = 518/536 (96.64%), Query Frame = -2

Query:  553 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQAQLSAGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGSI 2160
            MSMNGNNPPKNL  SSSPFGNAGMVPPPMPGNPAFSQAQLSAGFQAQYQLSQAQALAQAQSKAQAQAQAHAQLQAHLQAQGLSLNQAQNAGFGTLGSSSPSMSTPGSASAKRILQRPPMRPPGVPMMNTMSPLRTMELT AARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQ+LYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQ+P DP+ FNCDAQL KVFGE++VKFTMV  KISQHLSPPPPIHLEHK+KLSGNSP GN CYDVLVD+PFPIQRELSALL+N EKSKEI+ CDEAICA IRKIH+H RRRAFFLGFSQSPVEFINAL++SQS D+K+VAGE SRS+EKERRSDFFNQ WVEDAVIRYLNRKP AGSDAPGSI
Sbjct:    1 MSMNGNNPPKNL--SSSPFGNAGMVPPPMPGNPAFSQAQLSAGFQAQYQLSQAQALAQAQSKAQAQAQAHAQLQAHLQAQGLSLNQAQNAGFGTLGSSSPSMSTPGSASAKRILQRPPMRPPGVPMMNTMSPLRTMELTDAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQRLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQSPNDPTSFNCDAQLHKVFGEEKVKFTMVPLKISQHLSPPPPIHLEHKVKLSGNSPVGNVCYDVLVDLPFPIQRELSALLSNAEKSKEIETCDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSLDVKLVAGEASRSSEKERRSDFFNQPWVEDAVIRYLNRKPAAGSDAPGSI 534

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BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: A0A0B0P5P1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_27390 PE=4 SV=1)

HSP 1 Score: 864.374 bits (2232), Expect = 0.000e+0
Identity = 482/551 (87.48%), Postives = 498/551 (90.38%), Query Frame = -2

Query:  553 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQAQ----------LSAGFXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGSI 2160
            MSMN NNPPK+LGASSSPF NAGM     P NP FSQ Q          LSAGFQAQ+QLSQAQALA                AHAQ QA LQAQ LSLNQAQNAG G LGS+SPS STPGSAS KRI QRPPMRPPGVPM NTMSPLR MELT AARRKKQKLP+KQLQ+RVAAILPESALYTQLL+ E RVDAA+ARKKVDIQEALKNPP VQKTLRIYVFNTFANQ++TIP+KPNAEPP WTLKIIGRILE+G+DPDQPGFV +TNPLYPKFSSFFKRVTISLDQ+LYPDNHIIIWEHARSPTP EGFEVKRKG+KEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRI+AAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGSI
Sbjct:    1 MSMNNNNPPKSLGASSSPFSNAGM-----PANPVFSQVQAQAQAQVQAQLSAGFQAQFQLSQAQALALAQSKAQALAQAQGQAAHAQFQAQLQAQSLSLNQAQNAGIGNLGSTSPSFSTPGSASVKRIFQRPPMRPPGVPMTNTMSPLRMMELTPAARRKKQKLPDKQLQERVAAILPESALYTQLLDLETRVDAAVARKKVDIQEALKNPPSVQKTLRIYVFNTFANQVQTIPKKPNAEPPMWTLKIIGRILEEGIDPDQPGFVNKTNPLYPKFSSFFKRVTISLDQRLYPDNHIIIWEHARSPTPQEGFEVKRKGEKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRILAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGSI 546

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BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: A0A061ECY9_THECC (Chromatin remodeling complex subunit isoform 1 OS=Theobroma cacao GN=TCM_017181 PE=4 SV=1)

HSP 1 Score: 860.522 bits (2222), Expect = 0.000e+0
Identity = 471/546 (86.26%), Postives = 490/546 (89.74%), Query Frame = -2

Query:  556 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQAQ--LSAGFXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 2160
            MS+N NNPPK+LGASSSPFGNAGMV P M GNPAFSQAQ  LSAGFQAQ          Q                   AHAQ QAHLQAQGLSLNQ+QNAG G LGSSSPSMSTPGSA  KRILQ+PP+RPPGVPM NTMSPLRTMELT AARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIP+KPNAEPP WTLKIIGRILEDGVDPDQPGFVQ+TNPLYPKFSSFFK+VTISLDQ+LYP+NHIIIWEHARSP P+EGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNP DPSFFNCDAQLQKVFGED+VKFTMVSQKISQHL+ PPPIHLEHKIKLSGN P G ACYDVLVDVPFPIQRELSALLAN EKSKEIDACDEAICA IRKIH+H RRRAFFLGFSQSPVEFINAL++SQS+DLK+VAGE SRS E+ERRSDFFNQ WVEDAVIRYLNRKP AGSDAPGS
Sbjct:    1 MSVNNNNPPKSLGASSSPFGNAGMVAPSMAGNPAFSQAQAQLSAGFQAQFQLSQVQALAQAQAQAQSKAHAHAQAQAQVAHAQFQAHLQAQGLSLNQSQNAGIGNLGSSSPSMSTPGSA--KRILQKPPVRPPGVPMTNTMSPLRTMELTPAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPKKPNAEPPMWTLKIIGRILEDGVDPDQPGFVQKTNPLYPKFSSFFKKVTISLDQRLYPENHIIIWEHARSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSFFNCDAQLQKVFGEDKVKFTMVSQKISQHLASPPPIHLEHKIKLSGNGPVGTACYDVLVDVPFPIQRELSALLANAEKSKEIDACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKLVAGEASRSVERERRSDFFNQPWVEDAVIRYLNRKPAAGSDAPGS 544

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BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: A0A0D2RJA9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G091400 PE=4 SV=1)

HSP 1 Score: 855.899 bits (2210), Expect = 0.000e+0
Identity = 466/550 (84.73%), Postives = 483/550 (87.82%), Query Frame = -2

Query:  553 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAF--------------SQAQLSAGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGSI 2160
            MSMN NNPPK+LGASSSPF NAGM     PGNP F              +Q QLS       Q                   AHAQ QA LQAQ LSLNQAQNAG G +GSSSPS STPGSAS KRI QRPPMRPPGVPM NTMSPLR MELT AARRKKQKLP+KQLQ+RVAAILPESALYTQLL+ E RVDAA+ARKKVDIQEALKNPP VQKTLRIYVFNTFANQ++TIP+KPNAEPP WTLKIIGRILE+G+DPDQPGFV +TNP YPKFSSFFKRVTISLDQ+LYPDNHIIIWEHARSPTP EGFEVKRKG+KEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRI+AAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDV+VDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGSI
Sbjct:    1 MSMNNNNPPKSLGASSSPFSNAGM-----PGNPVFSQAQAQAQLSAGFQAQFQLSQA-----QALALAQSKAQALAQAQGQVAHAQFQAQLQAQSLSLNQAQNAGIGNIGSSSPSFSTPGSASVKRIFQRPPMRPPGVPMTNTMSPLRMMELTPAARRKKQKLPDKQLQERVAAILPESALYTQLLDLETRVDAAVARKKVDIQEALKNPPSVQKTLRIYVFNTFANQLQTIPKKPNAEPPMWTLKIIGRILEEGIDPDQPGFVNKTNPFYPKFSSFFKRVTISLDQRLYPDNHIIIWEHARSPTPQEGFEVKRKGEKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRILAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVVVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGSI 540

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BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: A0A067FKG9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009056mg PE=4 SV=1)

HSP 1 Score: 804.668 bits (2077), Expect = 0.000e+0
Identity = 435/544 (79.96%), Postives = 474/544 (87.13%), Query Frame = -2

Query:  556 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAF----SQAQLSAGFXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 2160
            MS N NNP K+LG +SSPF NAGM  P MP NP F    +QAQ+ AGF +Q      Q       ++  ++      AHAQLQAHLQAQGLS+NQ QNAG G LGSSSPS  TPG+AS KR+ Q+PP+RPP VPM N +SPL+ MELT+AARRKKQKLPEKQLQ+RVAAILPESALYTQLLEFEARVDAAL RKKVDIQEALKNPPC+QKTLRIYVFNTFANQIKTIP+KPNAEPPTWTLKIIGRILEDGVDPDQPG VQ++NPLYPKFSSFFKRVTISLDQ+LYPDNHII+WE++RSP P+EGFEVKRKGDKEFTVNIRLEMNYVPEKFKLS  LMEVLGIEVDTRPRIIAAIWHYVKARKLQ+P DPS F CD  LQKVFGE+++KFTMVSQKISQHLSPP PIHLEHKIKLSGNSP G ACYDVLVDVPFPIQRELS LLAN +K+KEID CDEAIC+ IRKIH+H RRRAFFLGFSQSPVEFIN L++SQS+DLK+VAGE SRSAEKERRSDFFNQ WVEDAVIRYLNRKP AGSDAPGS
Sbjct:    1 MSANNNNPAKSLGQTSSPFANAGMGSPSMPMNPGFPQSQAQAQMGAGFPSQFQLSQAQALAQAHQSKMHAQVAQAQAAHAQLQAHLQAQGLSINQFQNAGIGNLGSSSPSNLTPGNASLKRMPQKPPVRPPVVPMSNMVSPLKAMELTSAARRKKQKLPEKQLQERVAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKTIPKKPNAEPPTWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLYPDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRKPAAGSDAPGS 544

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: V4W2Z7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014820mg PE=4 SV=1)

HSP 1 Score: 802.742 bits (2072), Expect = 0.000e+0
Identity = 434/544 (79.78%), Postives = 473/544 (86.95%), Query Frame = -2

Query:  556 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAF----SQAQLSAGF-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 2160
            MS N NNP K+LG +SSPF NAGM  P MP NP F    +QAQ+ AGF      +Q Q       ++  ++      AHAQLQAHLQAQGLS+NQ QNAG G LGSSSPS  TPG+AS KR+ Q+PP+RPP VPM N +SPL+ MELT+AARRKKQKLPEKQLQ+RVAAILPESALYTQLLEFEARVDAAL RKKVDIQEALKNPPC+QKTLRIYVFNTFANQIKTIP+KPNAEPP WTLKIIGRILEDGVDPDQPG VQ++NPLYPKFSSFFKRVTISLDQ+LYPDNHII+WE++RSP P+EGFEVKRKGDKEFTVNIRLEMNYVPEKFKLS  LMEVLGIEVDTRPRIIAAIWHYVKARKLQ+P DPS F CD  LQKVFGE+++KFTMVSQKISQHLSPP PIHLEHKIKLSGNSP G ACYDVLVDVPFPIQRELS LLAN +K+KEID CDEAIC+ IRKIH+H RRRAFFLGFSQSPVEFIN L++SQS+DLK+VAGE SRSAEKERRSDFFNQ WVEDAVIRYLNRKP AGSDAPGS
Sbjct:    1 MSANNNNPAKSLGQTSSPFANAGMGSPSMPMNPGFPQSQAQAQMGAGFPSQFQLSQAQALAQAHQSKMHAQVAQAQAAHAQLQAHLQAQGLSINQFQNAGIGNLGSSSPSNLTPGNASLKRMPQKPPVRPPVVPMSNMVSPLKAMELTSAARRKKQKLPEKQLQERVAAILPESALYTQLLEFEARVDAALTRKKVDIQEALKNPPCLQKTLRIYVFNTFANQIKTIPKKPNAEPPMWTLKIIGRILEDGVDPDQPGMVQKSNPLYPKFSSFFKRVTISLDQRLYPDNHIIVWENSRSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPPLMEVLGIEVDTRPRIIAAIWHYVKARKLQHPNDPSIFTCDPPLQKVFGEEKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNSPVGTACYDVLVDVPFPIQRELSTLLANADKNKEIDQCDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEGSRSAEKERRSDFFNQPWVEDAVIRYLNRKPAAGSDAPGS 544

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: M5WSF0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003829mg PE=4 SV=1)

HSP 1 Score: 801.201 bits (2068), Expect = 0.000e+0
Identity = 441/545 (80.92%), Postives = 479/545 (87.89%), Query Frame = -2

Query:  553 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAF----SQAQLSAGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQG-----LSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGSI 2160
            MS+N NNP KNLGASSSPFGNAGMV   MP NP F    +QAQ+ AGFQAQ+QLSQAQA+A AQSKAQA AQA AQ              LSLNQ Q AG G LGSSSPS STPG+AS KR  Q+PP+RPP V   N MSP+RTMELT AAR+KKQKLP+KQLQD+VA ILPESALYTQLLEFEARVDAALARKKVDIQEALK+PPC+QKTLRIYVFNTFANQI+TIP+KPNAEPPTWTLKI+GRILEDGVDPDQPG VQ++NP YPKFSSFFKRVTISLDQ+LYP+NHII+WE+ARSP P+EGFEVKRKGDKEFTVNIRLEMNY PEKFKLS  LMEVLGIEV+TRPRIIA+IWHYVKARKLQN  DPSFFNCD  LQKVFGE+++KFTMVSQKISQHL PP PIHLEHKIKLSGNSPAG ACYDVLVDVPFPIQRELSALLAN EK+KEID CDEAICA IRKIH+H RRRAFFLGFSQSPVEFIN L++SQ++DLK+VAG  SRSAEKERRSDFF+Q WVEDAVIRYLNRKP AGSDAPGS+
Sbjct:    1 MSLNNNNPSKNLGASSSPFGNAGMVAQSMPTNPTFPQSQAQAQIGAGFQAQFQLSQAQAIAHAQSKAQAHAQAQAQQAHAQFQAQLQAQALSLNQNQAAGIGNLGSSSPSFSTPGNASLKRFPQKPPVRPPSVSPTNMMSPMRTMELTPAARKKKQKLPDKQLQDKVATILPESALYTQLLEFEARVDAALARKKVDIQEALKSPPCIQKTLRIYVFNTFANQIRTIPKKPNAEPPTWTLKIVGRILEDGVDPDQPGVVQKSNPFYPKFSSFFKRVTISLDQRLYPENHIIMWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYAPEKFKLSQPLMEVLGIEVETRPRIIASIWHYVKARKLQNQNDPSFFNCDPPLQKVFGEEKMKFTMVSQKISQHLFPPQPIHLEHKIKLSGNSPAGTACYDVLVDVPFPIQRELSALLANSEKNKEIDTCDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQNKDLKLVAGVASRSAEKERRSDFFHQPWVEDAVIRYLNRKPVAGSDAPGSM 545

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BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: F6H3Y6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g02140 PE=4 SV=1)

HSP 1 Score: 799.66 bits (2064), Expect = 0.000e+0
Identity = 417/547 (76.23%), Postives = 456/547 (83.36%), Query Frame = -2

Query:  556 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQAQLSAGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ------------GLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 2160
            M++N NNPPKNLGASSSPFGNAGM  P MP NP FSQ Q        +Q     + A                                   G++LNQ+Q  G G +G SSPS+  PG+++ KR LQ+PP+RPPG    NT+SPL+ MELT AARRKKQKLPEKQLQDRVAAILPESALYTQLLEFE+RVDAALARKK+DIQEALKNPPCVQKTLRIY+FNTFANQI+TIP+KPNAEPPTWTLKIIGRILE+GVDPDQ   + ++N  YPKFSSFFKRVTISLDQ+LYPDN IIIWE+ARSP P+EGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNP DPSFFNCD  LQKVFGED++KFTMVSQKISQHLSPP PIHLEHKIKLSGN PAGNACYDVLVDVPFPIQ+ELSALLAN EK+KEIDACDEAIC+ IRKIH+H RRRAFFLGFSQSPVEFIN L++SQS+DLK+VAGE SR+AEKERRSDFFNQ WVEDAVIRYLNRKP AGSDAPGS
Sbjct:    1 MAVNNNNPPKNLGASSSPFGNAGMGSPAMPANPVFSQPQAQGQIGGGFQGQFQLSQAHQAHVIAQAHSKAQAHAQAQAQAAHAQFQAQLQAQGMTLNQSQGIGIGNMGGSSPSIGAPGNSNMKRTLQKPPVRPPGPLGANTISPLKVMELTPAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFESRVDAALARKKIDIQEALKNPPCVQKTLRIYIFNTFANQIRTIPKKPNAEPPTWTLKIIGRILEEGVDPDQAAMLHKSNVSYPKFSSFFKRVTISLDQRLYPDNPIIIWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSFFNCDPPLQKVFGEDKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNCPAGNACYDVLVDVPFPIQKELSALLANTEKNKEIDACDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEASRNAEKERRSDFFNQPWVEDAVIRYLNRKPVAGSDAPGS 547

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BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Match: A5AZ58_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041986 PE=4 SV=1)

HSP 1 Score: 796.964 bits (2057), Expect = 0.000e+0
Identity = 416/547 (76.05%), Postives = 455/547 (83.18%), Query Frame = -2

Query:  556 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQAQLSAGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ------------GLSLNQAQNAGFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXXXXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 2160
            M++N NNPPKNLGASSSPFGNAGM  P MP NP FSQ Q        +Q     + A                                   G++LNQ+Q  G G +G SSPS+  PG+++ KR LQ+PP+RPPG    NT+SPL+ MELT AARRKKQKLPEKQLQDRVAAILPESALYTQLLEFE+RVDAALARKK+DIQEALKNPPCVQKTLRIY+FNTF NQI+TIP+KPNAEPPTWTLKIIGRILE+GVDPDQ   + ++N  YPKFSSFFKRVTISLDQ+LYPDN IIIWE+ARSP P+EGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNP DPSFFNCD  LQKVFGED++KFTMVSQKISQHLSPP PIHLEHKIKLSGN PAGNACYDVLVDVPFPIQ+ELSALLAN EK+KEIDACDEAIC+ IRKIH+H RRRAFFLGFSQSPVEFIN L++SQS+DLK+VAGE SR+AEKERRSDFFNQ WVEDAVIRYLNRKP AGSDAPGS
Sbjct:    1 MAVNNNNPPKNLGASSSPFGNAGMGSPAMPANPVFSQPQAQGQIGGGFQGQFQLSQAHQAHVIAQAHSKAQAHAQAQAQAAHAQFQAQLQAQGMTLNQSQGIGIGNMGGSSPSIGAPGNSNMKRXLQKPPVRPPGPLGANTISPLKVMELTPAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFESRVDAALARKKIDIQEALKNPPCVQKTLRIYIFNTFXNQIRTIPKKPNAEPPTWTLKIIGRILEEGVDPDQAAMLHKSNVSYPKFSSFFKRVTISLDQRLYPDNPIIIWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSFFNCDPPLQKVFGEDKMKFTMVSQKISQHLSPPQPIHLEHKIKLSGNCPAGNACYDVLVDVPFPIQKELSALLANTEKNKEIDACDEAICSAIRKIHEHRRRRAFFLGFSQSPVEFINTLIESQSKDLKLVAGEASRNAEKERRSDFFNQPWVEDAVIRYLNRKPVAGSDAPGS 547

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BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SNF12_ARATH (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1)

HSP 1 Score: 751.895 bits (1940), Expect = 0.000e+0
Identity = 407/537 (75.79%), Postives = 467/537 (86.96%), Query Frame = -2

Query:  556 MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQAQLSAGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLSLNQAQNA-GFGTLXXXXXXXXXXXXXXAKRILQXXXXXXXXX-XXMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRKPPAGSDAPGS 2160
            MS N NNP K  G++  PFGN GM    +PGN  F+Q+ ++A     +Q     + AQA + AQAQ++  AQLQA LQAQG+++NQAQ + G G LG SSPS++TPGS + KR  Q+PPMRPPG     NT+SP+RTMELT AAR+KKQKLPEK LQ+RVAAILPESALYTQLLEFE+RVDAAL RKKVDIQEALKNPPC+QKTLRIYVFN+FANQ  TIP  PNA+PPTWTLKIIGRILEDGVDPDQPGFVQ+ NPL+PKFSSFFKRVT+SLDQ+LYP+N +IIWE+ARSP P EGFE+KRKG++EF  +IRLEMNYVPEKFKLS+ALM+VLGIEV+TRPRIIAAIWHYVKARKLQNP DPSFFNCDA LQKVFGE+++KFTMVSQKIS HLSPPPPIHLEHKIKLSGN+PA +ACYDVLVDVPFPIQR+L+ LLAN EK+KEI+ACDEAICA IRKIH+H RRRAFFLGFSQSPVEFINAL++SQS+DLK+VAGE SR+AE+ERRSDFFNQ WVEDAVIRYLNR+P AG+D PGS
Sbjct:    1 MSGNNNNPQKPQGSAPLPFGNPGMASASVPGNQGFAQSHMAAN----FQAQFQFSQAQALAHAQAQSKVQAQLQAQLQAQGMTMNQAQGSPGIGGLGPSSPSLTTPGSLNMKRFQQKPPMRPPGAPASNNTISPMRTMELTPAARKKKQKLPEKSLQERVAAILPESALYTQLLEFESRVDAALTRKKVDIQEALKNPPCIQKTLRIYVFNSFANQNNTIPGNPNADPPTWTLKIIGRILEDGVDPDQPGFVQKANPLHPKFSSFFKRVTVSLDQRLYPENPLIIWENARSPAPQEGFEIKRKGNQEFAASIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPWVEDAVIRYLNRRPAAGNDGPGS 533

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BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SMRD1_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3)

HSP 1 Score: 273.478 bits (698), Expect = 1.639e-80
Identity = 149/385 (38.70%), Postives = 219/385 (56.88%), Query Frame = -2

Query:  586 KKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLY-PDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKM---VAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRK 1728
            KK+K+ +K L  R+  ++PES  Y  LL FE ++D  + RK++DIQEALK P   ++ LRI++ NTF N  K+  +       +W L++ GR+LED          Q+      KFSSFFK + I LD+ LY PDNH++ W    +    +GF+VKR GD      + L ++Y P +FKL   L  +LGI   TRP II A+W Y+K  KLQ+P++  F  CD  LQ++F   R+KF+ + Q++   L PP PI + H I +  N     ACYD+ V+V   ++ ++++ L +    +EI   D  I  TI  I+    +R F L F++ P  FIN  +QSQ +DLK    V G P    E+ERR++F+ Q W ++AV RY   K
Sbjct:  124 KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDAALSKYDATKQKR-----KFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNP----EEERRAEFYFQPWAQEAVCRYFYSK 498

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SMRD1_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.674e-80
Identity = 149/385 (38.70%), Postives = 219/385 (56.88%), Query Frame = -2

Query:  586 KKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLY-PDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKM---VAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRK 1728
            KK+K+ +K L  R+  ++PES  Y  LL FE ++D  + RK++DIQEALK P   ++ LRI++ NTF N  K+  +       +W L++ GR+LED          Q+      KFSSFFK + I LD+ LY PDNH++ W    +    +GF+VKR GD      + L ++Y P +FKL   L  +LGI   TRP II A+W Y+K  KLQ+P++  F  CD  LQ++F   R+KF+ + Q++   L PP PI + H I +  N     ACYD+ V+V   ++ ++++ L +    +EI   D  I  TI  I+    +R F L F++ P  FIN  +QSQ +DLK    V G P    E+ERR++F+ Q W ++AV RY   K
Sbjct:  124 KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNP----EEERRAEFYFQPWAQEAVCRYFYSK 498

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SMRD1_BOVIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 4.400e-79
Identity = 146/382 (38.22%), Postives = 219/382 (57.33%), Query Frame = -2

Query:  586 KKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLY-PDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVAGEPSRSAEKERRSDFFNQSWVEDAVIRYLNRK 1728
            KK+K+ +K L  R+  ++PES  Y  LL FE ++D  + RK++DIQEALK P   ++ LRI++ NTF N  K+  +       +W L++ GR+LED          Q+      KFSSFFK + I LD+ LY PDNH++ W    +    +GF+VKR GD      + L ++Y P +FKL   L  +LGI   TRP II A+W Y+K  KLQ+P++  F  CD  LQ++F   R+KF+ + Q++   L PP PI + H I +  N     ACYD+  +V   ++ ++++ L +    +EI   D  I  TI  I+    +R F L F++ P  FIN  +QSQ +DLK V  +   ++E+ERR++F+ Q W ++AV RY   K
Sbjct:  124 KKKKMADKILPQRIRELVPESQDYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF-NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR-----KFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDEEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLK-VMTDVVGNSEEERRAEFYFQPWAQEAVCRYFYSK 498

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: BAP60_DROME (Brahma-associated protein of 60 kDa OS=Drosophila melanogaster GN=Bap60 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.293e-78
Identity = 145/379 (38.26%), Postives = 220/379 (58.05%), Query Frame = -2

Query:  595 LPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGV-DPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLY-PDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKM---VAGEPSRSAEKERRSDFFNQSWVEDAVIRYL 1716
            L EK L  +V  ++PES  Y  LL FE ++DA + RK++DIQEALK P   ++ LRI++ NTF    +           +W L++ GR+LEDG  DP+          +  KFSSFFK + I LD++LY PDNH++ W    +    +GF+VKR GD+     I L ++Y P +FKL   L  +LG+   TRP II+A+W Y+K  KLQ+ ++  + NCD  L+++F   R+KF  + Q+++  L PP PI + H I+ SG      ACYD+ V+V   ++ ++++ L +    +EI   D  I  T+  I+     R FFL F++ P  FI+  + S+++DLK+   VAG P    E+ERR++F+ Q W  +AV RY 
Sbjct:  130 LAEKILPQKVRDLVPESQAYMDLLTFERKLDATIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPSKEPTNDGEEGAVASWELRVEGRLLEDGKGDPN--------TKIKRKFSSFFKSLVIELDKELYGPDNHLVEWHRTHTTQETDGFQVKRPGDRNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREYINCDKYLEQIFSCQRMKFAEIPQRLNPLLHPPDPIVINHFIE-SGAENKQTACYDIDVEVDDTLKNQMNSFLMSTASQQEIQGLDTKIHETVDTINQMKTNREFFLSFAKDPQMFIHRWIISETRDLKLMTDVAGNP----EEERRAEFYYQPWTHEAVSRYF 495

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SMRD3_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Mus musculus GN=Smarcd3 PE=1 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 1.585e-77
Identity = 154/398 (38.69%), Postives = 232/398 (58.29%), Query Frame = -2

Query:  595 TAAARR---KKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPP-----TWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLY-PDNHIIIWEHARSPTPNE--GFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKM---VAGEPSRSAEKERRSDFFNQSWVEDAVIRYL 1746
            TA AR    K++K+ +K L  R+  ++PES  Y  LL FE ++D  + RK+VDIQEALK P   ++ LR+Y+ NTF       P KP+AE       +W L++ G++L+D      P   +R      KFSSFFK + I LD+ LY PDNH++ W   R+PT  E  GF+VKR GD      + L ++Y P +FKL   L  +LG+   +R  I+ A+W YVK  +LQ+ +D  + N D   Q++F   R+KF+ + Q+++  L PP PI + H I +  +     ACYD+ V+V  P++ ++S+ L +    +EI A D  I  TI  I+    +R F L FS+ P  ++  L++SQS+DLK+   VAG P    E+ERR++F++Q W ++AV RY 
Sbjct:   90 TAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFN------PAKPDAEDSDGSIASWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKDLYGPDNHLVEWH--RTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNP----EEERRAEFYHQPWSQEAVSRYF 463

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SMRD3_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Homo sapiens GN=SMARCD3 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 1.585e-77
Identity = 154/398 (38.69%), Postives = 232/398 (58.29%), Query Frame = -2

Query:  595 TAAARR---KKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPP-----TWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLY-PDNHIIIWEHARSPTPNE--GFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKM---VAGEPSRSAEKERRSDFFNQSWVEDAVIRYL 1746
            TA AR    K++K+ +K L  R+  ++PES  Y  LL FE ++D  + RK+VDIQEALK P   ++ LR+Y+ NTF       P KP+AE       +W L++ G++L+D      P   +R      KFSSFFK + I LD+ LY PDNH++ W   R+PT  E  GF+VKR GD      + L ++Y P +FKL   L  +LG+   +R  I+ A+W YVK  +LQ+ +D  + N D   Q++F   R+KF+ + Q+++  L PP PI + H I +  +     ACYD+ V+V  P++ ++S+ L +    +EI A D  I  TI  I+    +R F L FS+ P  ++  L++SQS+DLK+   VAG P    E+ERR++F++Q W ++AV RY 
Sbjct:   90 TAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFN------PAKPDAEDSDGSIASWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKDLYGPDNHLVEWH--RTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNP----EEERRAEFYHQPWSQEAVSRYF 463

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SMRD2_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Mus musculus GN=Smarcd2 PE=2 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 1.963e-69
Identity = 139/398 (34.92%), Postives = 225/398 (56.53%), Query Frame = -2

Query:  595 AARR--KKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTF---------ANQIKTIPQKPNAEP-PTWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLY-PDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVA---GEPSRSAEKERRSDFFNQSWVEDAVIRYL 1740
            A RR  K++K+ +K L  R+  ++PES  Y  LL FE ++D  +ARK+++IQEA+K P   ++ LRIY+ NTF         A    T    P A+   +W L++ G++L+D      P   +R      KFSSFFK + I LD++LY PDNH++ W    +    +GF+VKR GD      + L +++ P ++KL   L  +LG+   TR  I+ A+W Y+K  +LQ+ ++  + NC+   +++F   R++F+ +  K++  L  P PI + H I +  N     ACYD+ V+V  P++ ++S  LA+    +EI + D  I  TI  I+    +R F L FS  P +FI   ++SQ +DLK++    G P    E+ERR+ F++Q W ++AV R++
Sbjct:  130 AQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKADGDNAGTAGTPGGTPAADKVASWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIITDVIGNP----EEERRAAFYHQPWAQEAVGRHI 511

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SMRD2_RAT (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Rattus norvegicus GN=Smarcd2 PE=2 SV=3)

HSP 1 Score: 243.047 bits (619), Expect = 3.627e-69
Identity = 137/398 (34.42%), Postives = 223/398 (56.03%), Query Frame = -2

Query:  595 AARR--KKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFA-----NQIKTIPQKPNAEPP-----TWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLY-PDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVA---GEPSRSAEKERRSDFFNQSWVEDAVIRYL 1740
            A RR  K++K+ +K L  R+  ++PES  Y  LL FE ++D  +ARK+++IQEA+K P   ++ LRIY+ NTF+              P   P      +W L++ G++L+D      P   +R      KFSSFFK + I LD++LY PDNH++ W    +    +GF+VKR GD      + L +++ P ++KL   L  +LG+   TR  I+ A+W Y+K  +LQ+ ++  + NC+   +++F   R++F+ +  K++  L  P PI + H I +  N     ACYD+ V+V  P++ ++S  LA+    +EI + D  I  TI  I+    +R F L FS  P +FI   ++SQ +DLK++    G P    E+ERR+ F++Q W ++AV R++
Sbjct:  130 AQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKADGDNSGTAGTPGGTPAADKVASWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIITDVIGNP----EEERRAAFYHQPWAQEAVGRHI 511

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Match: SMRD2_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Homo sapiens GN=SMARCD2 PE=1 SV=3)

HSP 1 Score: 242.276 bits (617), Expect = 5.315e-69
Identity = 137/398 (34.42%), Postives = 223/398 (56.03%), Query Frame = -2

Query:  595 AARR--KKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFA-----NQIKTIPQKPNAEPP-----TWTLKIIGRILEDGVDPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLY-PDNHIIIWEHARSPTPNEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPYDPSFFNCDAQLQKVFGEDRVKFTMVSQKISQHLSPPPPIHLEHKIKLSGNSPAGNACYDVLVDVPFPIQRELSALLANGEKSKEIDACDEAICATIRKIHDHCRRRAFFLGFSQSPVEFINALVQSQSQDLKMVA---GEPSRSAEKERRSDFFNQSWVEDAVIRYL 1740
            A RR  K++K+ +K L  R+  ++PES  Y  LL FE ++D  +ARK+++IQEA+K P   ++ LRIY+ NTF+              P   P      +W L++ G++L+D      P   +R      KFSSFFK + I LD++LY PDNH++ W    +    +GF+VKR GD      + L +++ P ++KL   L  +LG+   TR  I+ A+W Y+K  +LQ+ ++  + NC+   +++F   R++F+ +  K++  L  P PI + H I +  N     ACYD+ V+V  P++ ++S  LA+    +EI + D  I  TI  I+    +R F L FS  P +FI   ++SQ +DLK++    G P    E+ERR+ F++Q W ++AV R++
Sbjct:  130 AQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEGDSAGTAGTPGGTPAGDKVASWELRVEGKLLDD------PSKQKR------KFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNP----EEERRAAFYHQPWAQEAVGRHI 511

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0N8G3_GOSAR	0.000e+0	94.40	Uncharacterized protein OS=Gossypium arboreum GN=F...	[more]
A0A0D2QWK6_GOSRA	0.000e+0	93.84	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0P5P1_GOSAR	0.000e+0	87.48	Uncharacterized protein OS=Gossypium arboreum GN=F...	[more]
A0A061ECY9_THECC	0.000e+0	86.26	Chromatin remodeling complex subunit isoform 1 OS=...	[more]
A0A0D2RJA9_GOSRA	0.000e+0	84.73	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A067FKG9_CITSI	0.000e+0	79.96	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4W2Z7_9ROSI	0.000e+0	79.78	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
M5WSF0_PRUPE	0.000e+0	80.92	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
F6H3Y6_VITVI	0.000e+0	76.23	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A5AZ58_VITVI	0.000e+0	76.05	Putative uncharacterized protein OS=Vitis vinifera...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0021561 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 14


Match Name	E-value	Identity	Description
SNF12_ARATH	0.000e+0	75.79	SWI/SNF complex component SNF12 homolog OS=Arabido...	[more]
SMRD1_MOUSE	1.639e-80	38.70	SWI/SNF-related matrix-associated actin-dependent ...	[more]
SMRD1_HUMAN	1.674e-80	38.70	SWI/SNF-related matrix-associated actin-dependent ...	[more]
SMRD1_BOVIN	4.400e-79	38.22	SWI/SNF-related matrix-associated actin-dependent ...	[more]
BAP60_DROME	1.293e-78	38.26	Brahma-associated protein of 60 kDa OS=Drosophila ...	[more]
SMRD3_MOUSE	1.585e-77	38.69	SWI/SNF-related matrix-associated actin-dependent ...	[more]
SMRD3_HUMAN	1.585e-77	38.69	SWI/SNF-related matrix-associated actin-dependent ...	[more]
SMRD2_MOUSE	1.963e-69	34.92	SWI/SNF-related matrix-associated actin-dependent ...	[more]
SMRD2_RAT	3.627e-69	34.42	SWI/SNF-related matrix-associated actin-dependent ...	[more]
SMRD2_HUMAN	5.315e-69	34.42	SWI/SNF-related matrix-associated actin-dependent ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 335..414 e-value: 1.4E-17 score: 74.4
IPR003121	SWIB/MDM2 domain	GENE3D	1.10.245.10		coord: 329..420 e-value: 5.0E-29 score: 99.8
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 338..409 e-value: 5.4E-23 score: 80.5
IPR003121	SWIB/MDM2 domain	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 329..419
None	No IPR available	PANTHER	PTHR13844:SF13	SUBFAMILY NOT NAMED	coord: 9..91 coord: 151..544
None	No IPR available	PANTHER	PTHR13844	BRG-1 ASSOCIATED FACTOR 60 BAF60	coord: 9..91
None	No IPR available	PANTHER	PTHR13844	BRG-1 ASSOCIATED FACTOR 60 BAF60	coord: 151..544

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0021561 ID=g.arboreum_cottongen_reftransV1_0021561; Name=g.arboreum_cottongen_reftransV1_0021561; organism=Gossypium arboreum; type=contig; length=2287bp
GAAAGGGAGACCAAGGCATGCTGGTCCAAACTCTTCATGAGGATTTTTCT
TGATTTGCTAGTACCCAACATTTTTTTCGGACACTGATGTAAGGATCTCT
GACTTAAGGACCCTTAAAATACATGAAAGAGCTTTTAGAAATTTGGACAC
ACCCACATTTGAGACACATGACAATATCTGACACTCGTATCCTAAATCAA
GGTATGATTATCCTGGAGTGTACCATATATAAATTACAAATTGAACTAAA
TAAAACTATCATATGCTAATTTCTATTTTTTTTTTCGTTTAAAAAAGTTT
GATGATAACCATGCCTAAACAAGCTACTTCCTGTTCTACATCCCTCTCTA
AATCCTCATCCAACAACATTGTAATTCTACTTCCACTAAAGGACTGGTCT
ACAGTTCAGTTGATACATGATTCAAATCAATGAAAAACCTAGCAAGCCAT
CGATACCTTCGGAACCATGATTCATGTTCTTCCTGGAGCCTTACTTCCAG
TAGCTGGCTTCTCCAGGGCATCACTTTCCACTAGGTGGCTTTGCATGATT
CATATGCTTCCTGGAGCATCACTTCCAGCAGGTGGCTTGCGATTCAGATA
ACGGATCACAGCATCTTCAACCCAAGATTGGTTAAAGAAATCTGATCGCC
GCTCTTTTTCAGCACTTCGACTAGGTTCTCCAGCTACCATTTTCAGATCC
TGGCTCTGAGACTGAACTAAAGCATTTATAAATTCTACTGGAGATTGACT
GAATCCTAGGAAAAATGCACGTCTTCTACAGTGGTCATGAATTTTCCTTA
TGGTAGCACATATTGCTTCATCACAAGCATCAATCTCTTTGCTCTTCTCT
CCATTTGCCAACAGAGCAGACAATTCCCTCTGTATAGGAAAGGGCACGTC
AACTAACACATCATAGCATGCATTTCCAGCAGGACTATTCCCGGAAAGCT
TGATTTTATGCTCCAAATGTATGGGTGGTGGTGGAGACAAATGCTGTGAT
ATCTTCTGTGAAACCATGGTAAATTTCACTCTGTCTTCCCCAAAAACTTT
CTGAAGCTGTGCATCACAATTAAAAAAGGACGGATCATATGGGTTCTGAA
GTTTTCTAGCCTTCACATAATGCCAAATTGCAGCAATAATTCTGGGGCGC
GTATCAACTTCAATACCAAGGACTTCCATTAAAGCAGAAGAAAGCTTAAA
TTTCTCAGGTACATAATTCATTTCCAGCCGTATGTTCACAGTGAACTCCT
TATCCCCTTTTCTCTTCACCTCAAAACCTTCATTAGGTGTCGGTGATCGA
GCATGCTCCCATATAATGATATGATTATCTGGATATAGTTTTTGGTCCAA
TGAAATTGTCACTCTCTTGAAGAAAGATGAAAACTTCGGGTATAAAGGGT
TTGTTCTTTGAACAAATCCAGGTTGATCTGGATCTACTCCATCTTCCAGG
ATTCTCCCAATAATCTTAAGGGTCCATGTAGGAGGCTCTGCATTAGGCTT
CTGCGGAATTGTCTTAATCTGATTAGCAAATGTGTTGAAAACATATATTC
GAAGAGTTTTCTGAACACAAGGTGGGTTCTTAAGTGCTTCCTGGATGTCA
ACTTTTTTCCTAGCTAATGCAGCATCAACACGTGCCTCAAACTCAAGAAG
CTGGGTATACAAAGCAGATTCAGGAAGAATTGCTGCCACTCTATCCTGTA
GTTGTTTCTCAGGAAGCTTCTGCTTCTTTCTACGTGCAGCGGCTGTAAGT
TCCATTGTTCTCAAAGGTGACATTGTGTTCATCATAGGAACACCAGGAGG
GCGCATGGGGGGCCTTTGAAGGATTCTCTTTGCACTTGCACTGCCAGGAG
TAGACATGGAGGGTGAAGACGAACCTAATGTCCCAAAGCCAGCATTCTGA
GCCTGGTTAAGGGACAAACCTTGAGCTTGTAAGTGTGCTTGGAGTTGGGC
ATGAGCTTGAGCTTGAGCTTGAGCTTTCGACTGAGCCTGAGCAAGGGCTT
GAGCTTGGGATAGCTGATACTGAGCTTGAAACCCAGCGCTGAGTTGAGCT
TGTGAAAATGCAGGGTTTCCAGGCATAGGAGGAGGCACCATCCCCGCATT
ACCAAAGGGCGACGAAGATGCCCCAAGGTTCTTCGGGGGATTATTGCCAT
TCATAGACATCACCGGAAAAATATCAAATATCCACCAAAATCTAAAACAT
TCACAACAAAGCAAATTCCAAGCTATCTCAGCAAATACCCACTAACCAAA
AACACCCAAAGAAGCAATGATTCCCTTTAAAATCAAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR019835	SWIB_domain
IPR003121	SWIB_MDM2_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Search form

g.arboreum_cottongen_reftransV1_0021561, g.arboreum_cottongen_reftransV1_0021561 (contig) Gossypium arboreum

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