g.arboreum_cottongen_reftransV1_0000709, g.arboreum_cottongen_reftransV1_0000709 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy TrEMBL
Match: A0A0B0PR11_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_00433 PE=4 SV=1) HSP 1 Score: 310.842 bits (795), Expect = 3.251e-99 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = -1 Query: 310 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIRNGKEVEGLLVSMKDDKIDENEDTMKILSLQDQNSQVTG 762 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIRNGKEVEGLLVSMKDDKIDENEDTMKILSLQDQNSQVTG Sbjct: 357 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIRNGKEVEGLLVSMKDDKIDENEDTMKILSLQDQNSQVTG 507
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy TrEMBL
Match: A0A0D2R1Z7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G071700 PE=4 SV=1) HSP 1 Score: 302.368 bits (773), Expect = 6.762e-96 Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = -1 Query: 310 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIRNGKEVEGLLVSMKDDKIDENEDTMKILSLQDQNSQVTG 762 GYCQK LVEKA+AKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIRNGKEVEGLLVSMKDDKIDEN DTMKILSLQDQNS+VTG Sbjct: 357 GYCQKDLVEKAEAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIRNGKEVEGLLVSMKDDKIDENGDTMKILSLQDQNSEVTG 507
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy TrEMBL
Match: A0A061F6C9_THECC (Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao GN=TCM_031426 PE=4 SV=1) HSP 1 Score: 251.521 bits (641), Expect = 2.093e-76 Identity = 122/147 (82.99%), Postives = 132/147 (89.80%), Query Frame = -1 Query: 322 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIRNGKEVEGLLVSMKDDKIDENEDTMKILSLQDQNS 762 GYCQKGL+EKA+AKLQDII+RRK A PNSWSI+A GY+NKN MEKAFECFKEALA Q+QNR W+PKA LISSILSWLGENGEVEDAEAFVKLL TKVP NREMYHALLKA IRNGKEVEGLL MK KIDE+E+TMKILSL+ QNS Sbjct: 360 GYCQKGLIEKAEAKLQDIIRRRKTATPNSWSIIAAGYLNKNNMEKAFECFKEALAAQSQNRDWRPKASLISSILSWLGENGEVEDAEAFVKLLITKVPPNREMYHALLKACIRNGKEVEGLLQCMKVYKIDEDEETMKILSLRRQNS 506
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy TrEMBL
Match: B9SNN7_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1010390 PE=4 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 1.358e-59 Identity = 94/143 (65.73%), Postives = 120/143 (83.92%), Query Frame = -1 Query: 334 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIRNGKEVEGLLVSMKDDKIDENEDTMKILSLQ 762 GYCQ+GL+EKA+A L+DI+K++K PNSW+I+A GY+NK MEKAF C KEAL +Q +N+GW+PKA LISSILSWLGENG+VED EAFV LL TKVP +RE+YH L+KAYIR GK+V+G+L +M +KIDE+E+T ILSL+ Sbjct: 355 GYCQQGLIEKAEAMLKDIVKKQKNPTPNSWAIIAAGYVNKQNMEKAFNCMKEALTVQAENKGWRPKANLISSILSWLGENGDVEDVEAFVNLLETKVPKDREIYHTLIKAYIRGGKQVDGVLENMTANKIDEDEETKTILSLR 497
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy TrEMBL
Match: F6H257_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02920 PE=4 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 1.881e-53 Identity = 87/148 (58.78%), Postives = 117/148 (79.05%), Query Frame = -1 Query: 319 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIRNGKEVEGLLVSMKDDKIDENEDTMKILSLQDQNSQ 762 G+CQKGL+EKA++ L+DI++ K PNSWSIVA GY+ K MEKAFEC KEA+A+ +N+GW+PK +ISSILSWLG+N +VE+ E FV L+ +P++REMYHA ++A IR GKEV+G+L SMK DKIDE+E+T KILSL+ ++ Sbjct: 357 GFCQKGLIEKAESMLRDIVEEGKTPTPNSWSIVAAGYIEKQNMEKAFECMKEAIAVLAENKGWRPKPKVISSILSWLGDNRDVEEVETFVSALKAVIPMDREMYHAQIRASIRAGKEVDGILDSMKADKIDEDEETRKILSLKHDKAE 504
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy TrEMBL
Match: M5WGV8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004720mg PE=4 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 1.899e-53 Identity = 86/143 (60.14%), Postives = 118/143 (82.52%), Query Frame = -1 Query: 334 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIRNGKEVEGLLVSMKDDKIDENEDTMKILSLQ 762 GYCQKGLVE+A+ L+DI+K+ K PNSW+I+A GY++K KM+KAFEC EAL ++ +N GW+PK G++SS+LSW+G+NG++E EAFV L++T + VNREMYHAL+KAYIR GKEVEGLL SMK+D+I+ +++ ILSL+ Sbjct: 353 GYCQKGLVEQAEDTLRDIVKKGKTPTPNSWAILAAGYVDKQKMQKAFECMTEALNLRARNTGWRPKPGVVSSVLSWIGDNGDIEQVEAFVSLMKTVITVNREMYHALMKAYIRCGKEVEGLLHSMKEDQIEADDE---ILSLR 492
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy TrEMBL
Match: A0A067K458_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20975 PE=4 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 2.952e-53 Identity = 91/140 (65.00%), Postives = 111/140 (79.29%), Query Frame = -1 Query: 343 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIRNGKEVEGLLVSMKDDKIDENEDTMKIL 762 GYCQKGL+EKA+A L+DI KR+K PNSWSI+A GY+NK MEKAF+C KEA+ + ++N+GW+PK LIS ILSWLG+NG+VE+ EAFV L T V NREMY L+KAYIR GKEV+GLL SMK DKID +E+T IL Sbjct: 357 GYCQKGLIEKAEAMLRDIGKRQKTVTPNSWSIMAEGYVNKQNMEKAFQCMKEAVNVASENKGWRPKPNLISVILSWLGDNGDVEEVEAFVSSLETVVQKNREMYRTLIKAYIRGGKEVDGLLESMKADKIDIDEETKTIL 496
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy TrEMBL
Match: B9HZW0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s12150g PE=4 SV=2) HSP 1 Score: 188.348 bits (477), Expect = 2.729e-52 Identity = 91/146 (62.33%), Postives = 118/146 (80.82%), Query Frame = -1 Query: 328 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIRNGKEVEGLLVSMK-DDKIDENEDTMKILSLQDQ 762 GY +KGL EKA+A LQDII+++K+ P+SWSI++ GYM+K MEKAFEC KEALA +T+N GW+PK +IS+IL+WLG+N + ++ EAFV LL TKVP +REMYHAL+K+YIR GKEV+GLL SMK D IDE+E+T ILS + Q Sbjct: 354 GYSRKGLPEKAEAMLQDIIEKQKMKNPSSWSIISAGYMDKQNMEKAFECMKEALAAETENNGWRPKPAMISNILNWLGDNRDAQEVEAFVGLLETKVPKSREMYHALIKSYIRCGKEVDGLLESMKAADNIDEDEETKTILSSRQQ 499
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy TrEMBL
Match: A0A061FEM0_THECC (Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao GN=TCM_031435 PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 5.497e-49 Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = -1 Query: 436 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLK 762 GYCQKGL+EKA AKLQDIIKRRK A PNSWSI++ GY++KN M KAFECFKEALA+Q QNR W+PK LISSILSWLGENGEVE AE FVKL T+ P NR+ YHALLK Sbjct: 381 GYCQKGLIEKADAKLQDIIKRRKTATPNSWSIISAGYVHKNNMGKAFECFKEALAVQAQNRDWRPKESLISSILSWLGENGEVEAAEDFVKLSMTRFPPNRQTYHALLK 489
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy TrEMBL
Match: I1MEH9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 5.416e-48 Identity = 81/141 (57.45%), Postives = 107/141 (75.89%), Query Frame = -1 Query: 340 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIRNGKEVEGLLVSMKDDKIDENEDTMKILS 762 GY QKGL EKA A L+++ + K+ PN WSIVA GY++K +MEKAF+CFK AL++ +N+GWKP A +I+ +L W+G+NG VEDAE V LLR VPVNR+MYH L+K YIR GKEV+ LL M+ D IDEN++T KI++ Sbjct: 342 GYSQKGLHEKALAMLEELQNKEKVTTPNCWSIVAGGYIHKGEMEKAFKCFKTALSLYVENKGWKPNAKVIAELLRWIGDNGSVEDAEVLVSLLRNAVPVNRQMYHTLIKTYIRGGKEVDDLLGRMEKDGIDENKETKKIIN 482
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.812e-36 Identity = 66/144 (45.83%), Postives = 98/144 (68.06%), Query Frame = -1 Query: 334 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIR-NGKEVEGLLVSMKDDKIDENEDTMKILSLQ 762 GY K + EKA+A L+D+ +R K P SW +VAT Y K +E AF+C K AL ++ +R W+P L++S+LSW+G+ G +++ E+FV LR + VN++MYHAL+KA IR G+ ++ LL MKDDKI+ +E+T ILS + Sbjct: 346 GYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVILSTR 489
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 2.025e-8 Identity = 38/150 (25.33%), Postives = 73/150 (48.67%), Query Frame = -1 Query: 319 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRG-WKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVP-VNREMYHALLKAYIRNGKEVEGLLVSMKDDKIDENEDTMKILSLQDQNSQ 762 Y Q+GL++KA + +R +W I Y+ M +A EC +A++I + G W P + +++S+ + +V AE +++L+ + E++ L++ Y GK + +K + ++ NE T K+L D+ SQ Sbjct: 343 AYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEATKKLL---DEVSQ 489
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 6.316e-8 Identity = 31/106 (29.25%), Postives = 60/106 (56.60%), Query Frame = -1 Query: 451 GYCQKGLVEKAKAKLQDIIKRRKIAIPNSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLL--RTKVPVNREMY 762 GYC+KG++EKA+ + ++++ ++ ++W +A GY KMEKA E +K AI+ GW+P ++ S + +L ++E ++LL R + ++ +Y Sbjct: 359 GYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKWKR--AIEVSKPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHISYDQLLY 462
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 1.553e-7 Identity = 32/118 (27.12%), Postives = 60/118 (50.85%), Query Frame = -1 Query: 328 NSWSIVATGYMNKNKMEKAFECFKEALAIQTQNRGWKPKAGLISSILSWLGENGEVEDAEAFVKLLRTKVPVNREMYHALLKAYIRNGKEVEGLLVSMKDDKIDENEDTMKILSLQDQ 681 ++W I+ Y+ + MEK +CF +A+ + W L+ L E G V+ AE + LL+ VN ++Y++LL+ Y + G+ + M D ++ +E+T +++ L Q Sbjct: 407 STWEILTWAYLKRKDMEKVLDCFGKAI---DSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLLRTYAKAGEMALIVEERMAKDNVELDEETKELIRLTSQ 521 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0000709 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000709 ID=g.arboreum_cottongen_reftransV1_0000709; Name=g.arboreum_cottongen_reftransV1_0000709; organism=Gossypium arboreum; type=contig; length=762bpback to top |