g.arboreum_cottongen_reftransV1_0007404, g.arboreum_cottongen_reftransV1_0007404 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0007404
Unique Nameg.arboreum_cottongen_reftransV1_0007404
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length322
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0007404:1..321 .
Chr1:2333631..2334384 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: G7JS42_MEDTR (Phosphoinositide phosphatase SAC4 OS=Medicago truncatula GN=MTR_4g124630 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.884e-37
Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 2
Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHKH +SK+TNVLLLLGKVA YALTLTGFFYC+V+S LRPE+C+ WPS++++D G  SP  + +  NE A+ LE     + N +N NHS KPP  Q G
Sbjct:  384 NRLRFLHWDLHKHFQSKATNVLLLLGKVAAYALTLTGFFYCQVSSTLRPEDCLKWPSTDDVDKGSFSPTVHVEYDNEDANDLERKPSDEINVSNENHSAKPPRLQNG 490          
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: A0A072UTN6_MEDTR (Phosphoinositide phosphatase SAC4 OS=Medicago truncatula GN=MTR_4g124630 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.471e-37
Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 2
Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHKH +SK+TNVLLLLGKVA YALTLTGFFYC+V+S LRPE+C+ WPS++++D G  SP  + +  NE A+ LE     + N +N NHS KPP  Q G
Sbjct:  384 NRLRFLHWDLHKHFQSKATNVLLLLGKVAAYALTLTGFFYCQVSSTLRPEDCLKWPSTDDVDKGSFSPTVHVEYDNEDANDLERKPSDEINVSNENHSAKPPRLQNG 490          
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: D7TC94_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g00440 PE=4 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.957e-36
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 2
Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRL+FLHWDLH+HSRSK+TNVLLLLG+VA+YALTLTGFFY +VT  L+PE+C+  P  EN D  D+S  + C++ NE  D LE    G NN ANGNHSVKPP  Q+G
Sbjct:  378 NRLKFLHWDLHRHSRSKATNVLLLLGRVASYALTLTGFFYRQVTPDLKPEDCLKGPQLENSDMSDLSLHENCESHNEDDDNLERKFSGGNNIANGNHSVKPPMLQKG 484          
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: I1LYA9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 8.510e-35
Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 2
Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHKH +SK+TNVL LLGKVA YALTLT FFYC+ T  LRPEE + W S++++D+G  SP ++ ++ N  A+ LE      NN AN NHSVKPP  QRG
Sbjct:  388 NRLRFLHWDLHKHFQSKATNVLQLLGKVAAYALTLTSFFYCQTTPTLRPEESLKWQSTDSVDEGTFSPTRHANDDNGDANNLERKPSEGNNDANENHSVKPPMLQRG 494          
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Match: I1LYA8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.523e-35
Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 2
Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHKH +SK+TNVL LLGKVA YALTLT FFYC+ T  LRPEE + W S++++D+G  SP ++ ++ N  A+ LE      NN AN NHSVKPP  QRG
Sbjct:  388 NRLRFLHWDLHKHFQSKATNVLQLLGKVAAYALTLTSFFYCQTTPTLRPEESLKWQSTDSVDEGTFSPTRHANDDNGDANNLERKPSEGNNDANENHSVKPPMLQRG 494          
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Match: SAC3_ARATH (Phosphoinositide phosphatase SAC3 OS=Arabidopsis thaliana GN=SAC3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.506e-22
Identity = 56/107 (52.34%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHKH RSK+ NVL LL KVA  AL LT  FY +VT A+  E+ M+  SS + D GD+SP    D+ N   D LE       N A G   VKPP  Q G
Sbjct:  373 NRLRFLHWDLHKHFRSKTKNVLALLCKVATCALMLTDLFYYQVTPAMTIEDSMSLSSSSDADTGDISPHTSSDDDNGDHDSLEKKSSRSKNIAYGKCDVKPPRLQSG 479          
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Match: SAC4_ARATH (Phosphoinositide phosphatase SAC4 OS=Arabidopsis thaliana GN=SAC4 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.715e-22
Identity = 56/107 (52.34%), Postives = 66/107 (61.68%), Query Frame = 2
Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTWPSSENIDDGDMSPPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            NRLRFLHWDLHKH  SK+ NVL LLGKVA  AL LTGFFY ++T A++ E  M+  SS    D D SP    D+ +   D LE N     N ANG++ VKP   Q G
Sbjct:  382 NRLRFLHWDLHKHFHSKTENVLALLGKVAACALMLTGFFYYQLTPAMKLEGYMSLSSS----DADTSPHNSSDDDSRDYDSLEKNCRPSKNVANGDYDVKPSRLQSG 484          
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Match: SAC2_ARATH (Phosphoinositide phosphatase SAC2 OS=Arabidopsis thaliana GN=SAC2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.227e-16
Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 2
Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFYCRVTSALRPEECMTW-PSSENIDDGDMS---PPKYCDNVNEGADRLEGNHFGDNNTANGNHSVKPPTFQRG 322
            +RLR LHWDLHKHSR K TNVL +LG++A YAL LT  FYC++T  LR E      PS+   DDG+ S   PP    + +E A  L   +  D+  A  +   +    Q+G
Sbjct:  378 DRLRPLHWDLHKHSRKKGTNVLAILGRLATYALNLTSIFYCQLTPDLRGEGFQNQNPSTLENDDGECSTYDPP----SKDETAPNLVVENGNDSKDAKEDQQKEVTMLQKG 484          
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Match: SAC1_ARATH (Phosphoinositide phosphatase SAC1 OS=Arabidopsis thaliana GN=SAC1 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.126e-8
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 2
Query:    2 NRLRFLHWDLHKHSRSKSTNVLLLLGKVANYALTLTGFFY 121
            N L+F+HWD HK ++SKS NVL +LG VA+ AL LTG ++
Sbjct:  393 NHLKFIHWDFHKFAKSKSANVLAVLGAVASEALDLTGLYF 432          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
G7JS42_MEDTR5.884e-3761.68Phosphoinositide phosphatase SAC4 OS=Medicago trun... [more]
A0A072UTN6_MEDTR6.471e-3761.68Phosphoinositide phosphatase SAC4 OS=Medicago trun... [more]
D7TC94_VITVI1.957e-3663.55Putative uncharacterized protein OS=Vitis vinifera... [more]
I1LYA9_SOYBN8.510e-3560.75Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
I1LYA8_SOYBN8.523e-3560.75Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0007404 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SAC3_ARATH4.506e-2252.34Phosphoinositide phosphatase SAC3 OS=Arabidopsis t... [more]
SAC4_ARATH4.715e-2252.34Phosphoinositide phosphatase SAC4 OS=Arabidopsis t... [more]
SAC2_ARATH4.227e-1643.24Phosphoinositide phosphatase SAC2 OS=Arabidopsis t... [more]
SAC1_ARATH2.126e-857.50Phosphoinositide phosphatase SAC1 OS=Arabidopsis t... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..105
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0007404 ID=g.arboreum_cottongen_reftransV1_0007404; Name=g.arboreum_cottongen_reftransV1_0007404; organism=Gossypium arboreum; type=contig; length=322bp
GAACCGTTTGAGATTCCTTCACTGGGATCTACACAAACATTCTCGGAGCA
AATCGACAAATGTTTTGCTACTTTTGGGTAAAGTGGCCAATTATGCATTA
ACGCTAACAGGTTTCTTTTATTGTCGGGTGACATCAGCCTTGAGACCTGA
GGAGTGTATGACATGGCCTTCCTCTGAGAATATTGATGATGGTGACATGT
CACCCCCAAAATACTGTGACAATGTTAACGAGGGTGCTGACAGATTGGAG
GGGAATCATTTTGGTGATAATAATACTGCTAATGGAAATCATTCTGTCAA
GCCTCCCACTTTCCAAAGAGGT
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