g.arboreum_cottongen_reftransV1_0011260, g.arboreum_cottongen_reftransV1_0011260 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A0D2RGY4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G177400 PE=4 SV=1) HSP 1 Score: 339.732 bits (870), Expect = 3.814e-111 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MGIFTRSTVSRKPNESMRLIVTTFVGVVFGFLIGLSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV Sbjct: 1 MGIFTRSTVSRKPNESMRLIVTTFVGVVFGFLIGLSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 186
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A0D2PVV1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G161300 PE=4 SV=1) HSP 1 Score: 288.886 bits (738), Expect = 3.345e-91 Identity = 158/186 (84.95%), Postives = 168/186 (90.32%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MGIFTRS VSRKPNESMRLIVT FVGVVFGFLIGL FPKLSLTKF++S+ I T ID KYTEYT PS ST + HP+ NN SSAN T KKIWVPSNPRGAERLPPGIV+AESDLYLRRLWGKP+EDLTS PKYLVTFTVGY+QRKNIDAAVKKFSGNFTILLFHYDG+TTEWDEFEWSK+AIHVSV Sbjct: 1 MGIFTRSVVSRKPNESMRLIVTAFVGVVFGFLIGLCFPKLSLTKFSLSTSIFTAIDFKYTEYTKLGPSSSTRVSHPVVNNGSSANVTLKKIWVPSNPRGAERLPPGIVRAESDLYLRRLWGKPSEDLTSKPKYLVTFTVGYDQRKNIDAAVKKFSGNFTILLFHYDGRTTEWDEFEWSKKAIHVSV 186
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A0B0PGX3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_04429 PE=4 SV=1) HSP 1 Score: 288.115 bits (736), Expect = 4.932e-91 Identity = 157/186 (84.41%), Postives = 168/186 (90.32%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MGIFTRS VSRKPNESMRLIVTTF GVVFGFLIGL FPKLSLTKF++S+ ILT ID KYTEYT PS ST + HP+ NN S AN T +KIWVPSNPRGAERLPPGIV+AESDLYLRRLWGKP+EDLTS PKYLVTFTVGY+QRKNIDAAVKKFSGNFTILLFHYDG+TTEWDEFEWSK+AIHVSV Sbjct: 1 MGIFTRSIVSRKPNESMRLIVTTFFGVVFGFLIGLCFPKLSLTKFSLSTSILTAIDFKYTEYTKLGPSSSTHVSHPVGNNGSCANVTLRKIWVPSNPRGAERLPPGIVRAESDLYLRRLWGKPSEDLTSKPKYLVTFTVGYDQRKNIDAAVKKFSGNFTILLFHYDGRTTEWDEFEWSKKAIHVSV 186
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A061EEJ6_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_010561 PE=4 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 4.069e-90 Identity = 159/186 (85.48%), Postives = 168/186 (90.32%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MGIFTRS VSRKPNESMRLI+TTFVGVVFGFLIG+SFP LS TK N+SS ILT+ID YT+Y NS PS ST + PI NN SSAN TSKKIWVPSNPRGAERL PGIV+AESDLYLRRLWGKP+EDLTSTPKYLVTFTVGYNQR NIDAAVKKFSGNFTILLFHYDG+TTEWDEFEWSKQAIHVSV Sbjct: 1 MGIFTRSKVSRKPNESMRLIITTFVGVVFGFLIGVSFPTLSFTKLNLSSSILTSIDFSYTQYKNSGPSNSTHVPPPIGNNGSSANVTSKKIWVPSNPRGAERLAPGIVRAESDLYLRRLWGKPSEDLTSTPKYLVTFTVGYNQRMNIDAAVKKFSGNFTILLFHYDGRTTEWDEFEWSKQAIHVSV 186
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A061E7T4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_010561 PE=4 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 4.260e-90 Identity = 159/186 (85.48%), Postives = 168/186 (90.32%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MGIFTRS VSRKPNESMRLI+TTFVGVVFGFLIG+SFP LS TK N+SS ILT+ID YT+Y NS PS ST + PI NN SSAN TSKKIWVPSNPRGAERL PGIV+AESDLYLRRLWGKP+EDLTSTPKYLVTFTVGYNQR NIDAAVKKFSGNFTILLFHYDG+TTEWDEFEWSKQAIHVSV Sbjct: 1 MGIFTRSKVSRKPNESMRLIITTFVGVVFGFLIGVSFPTLSFTKLNLSSSILTSIDFSYTQYKNSGPSNSTHVPPPIGNNGSSANVTSKKIWVPSNPRGAERLAPGIVRAESDLYLRRLWGKPSEDLTSTPKYLVTFTVGYNQRMNIDAAVKKFSGNFTILLFHYDGRTTEWDEFEWSKQAIHVSV 186
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A0D2T709_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G161300 PE=4 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 6.533e-81 Identity = 125/151 (82.78%), Postives = 135/151 (89.40%), Query Frame = 1 Query: 478 SFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 FPKLSLTKF++S+ I T ID KYTEYT PS ST + HP+ NN SSAN T KKIWVPSNPRGAERLPPGIV+AESDLYLRRLWGKP+EDLTS PKYLVTFTVGY+QRKNIDAAVKKFSGNFTILLFHYDG+TTEWDEFEWSK+AIHVSV Sbjct: 20 CFPKLSLTKFSLSTSIFTAIDFKYTEYTKLGPSSSTRVSHPVVNNGSSANVTLKKIWVPSNPRGAERLPPGIVRAESDLYLRRLWGKPSEDLTSKPKYLVTFTVGYDQRKNIDAAVKKFSGNFTILLFHYDGRTTEWDEFEWSKKAIHVSV 170
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: V7D1Y5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G255300g PE=4 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 1.345e-67 Identity = 128/190 (67.37%), Postives = 151/190 (79.47%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANATS----KKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MGI TRS+ SRKP+E MR VTTF+G+VFGF IG+S P LS+TK N+ SG+L +ID+ Y E + + + + N RSS+ + KIWVPSNPRGAERLPPGIV+AESD YLRRLWGKP+EDLTS PKYLVTFTVGY Q+KNIDAAVKKFSGNF++LLFHYDG+TTEWDEFEWSK+AIHVS Sbjct: 1 MGIITRSSASRKPSEIMRFFVTTFIGIVFGFFIGVSVPTLSITKLNLPSGLLPSIDLSYIEDRYTGRQAWSFMNN--GNKRSSSQVKALNDTSKIWVPSNPRGAERLPPGIVEAESDFYLRRLWGKPSEDLTSKPKYLVTFTVGYEQKKNIDAAVKKFSGNFSVLLFHYDGRTTEWDEFEWSKRAIHVSA 188
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: I1LNG4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 1.404e-67 Identity = 127/190 (66.84%), Postives = 148/190 (77.89%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSANAT----SKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 MGI TRS+ RKP+E MR VTTF+ +V GF IG+S P LS+TK N+ SG+L +ID+ Y E + + + + N RSS+ + KIWVPSNPRGAERLPPGIV+AESD YLRRLWGKP+EDLTS P YLVTFTVGY+Q+ NIDAAVKKFSGNFTILLFHYDG+TTEWDEFEWSKQAIHVSV Sbjct: 1 MGIITRSSAGRKPSEIMRFFVTTFISIVLGFFIGVSVPTLSITKLNLPSGLLPSIDLSYIEDRYTGRQAWSFMNN--GNKRSSSQVQLSNDTSKIWVPSNPRGAERLPPGIVEAESDYYLRRLWGKPSEDLTSRPNYLVTFTVGYDQKNNIDAAVKKFSGNFTILLFHYDGRTTEWDEFEWSKQAIHVSV 188
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: I1MYM9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 5.537e-66 Identity = 126/190 (66.32%), Postives = 151/190 (79.47%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSA----NATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 M I TRS+ RKP+E M+ +TTF+G+VFGF IG+S P LS+TK N+ SG+L +ID+ Y E + + + + N RSS+ ++ + KIWVPSNPRGAERLPPGIV+AESD YLRRLWGKP+EDLTS P YLVTFTVGY+Q+ NIDAAVKKFSGNFTILLFHYDG+TTEWDEFEWSKQAIHVSV Sbjct: 1 MVIITRSSAGRKPSEIMKFFLTTFIGIVFGFFIGVSIPTLSITKLNLPSGLLPSIDLSYIEDRYAGRQAWSFMNN--GNKRSSSQVQLSSDTSKIWVPSNPRGAERLPPGIVEAESDFYLRRLWGKPSEDLTSRPNYLVTFTVGYDQKNNIDAAVKKFSGNFTILLFHYDGRTTEWDEFEWSKQAIHVSV 188
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: A0A0B2SGN1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_048217 PE=4 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 5.537e-66 Identity = 126/190 (66.32%), Postives = 151/190 (79.47%), Query Frame = 1 Query: 373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQHPIDNNRSSA----NATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930 M I TRS+ RKP+E M+ +TTF+G+VFGF IG+S P LS+TK N+ SG+L +ID+ Y E + + + + N RSS+ ++ + KIWVPSNPRGAERLPPGIV+AESD YLRRLWGKP+EDLTS P YLVTFTVGY+Q+ NIDAAVKKFSGNFTILLFHYDG+TTEWDEFEWSKQAIHVSV Sbjct: 1 MVIITRSSAGRKPSEIMKFFLTTFIGIVFGFFIGVSIPTLSITKLNLPSGLLPSIDLSYIEDRYAGRQAWSFMNN--GNKRSSSQVQLSSDTSKIWVPSNPRGAERLPPGIVEAESDFYLRRLWGKPSEDLTSRPNYLVTFTVGYDQKNNIDAAVKKFSGNFTILLFHYDGRTTEWDEFEWSKQAIHVSV 188 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011260 ID=g.arboreum_cottongen_reftransV1_0011260; Name=g.arboreum_cottongen_reftransV1_0011260; organism=Gossypium arboreum; type=contig; length=932bpback to top |