g.arboreum_cottongen_reftransV1_0011260, g.arboreum_cottongen_reftransV1_0011260 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011260
Unique Nameg.arboreum_cottongen_reftransV1_0011260
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length932
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0011260:1..932 .
Chr11:40976514..40980163 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: V4SUF0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031670mg PE=4 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.477e-62
Identity = 131/200 (65.50%), Postives = 156/200 (78.00%), Query Frame = 1 
Query:  352 SDEFLNRMGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQ--HPID-NNRSSANAT----SKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            + + LN+MG   RS+++RK NESMRLIVTTFVGVVFGF IG+SFP LSLTK  + S +L T++  Y E   S  S    L   +P++ NN SS  A     + KIWVP+NPRGAERLPP IV+AESD YLRRLWG PNEDLTS PKYLVTFTVGY+Q+ NI+AA+KKFS NFTI+LFHYDG+TTEW+EFEWSK+AIHVSV
Sbjct:    7 NQKILNKMGTAARSSINRKTNESMRLIVTTFVGVVFGFFIGVSFPTLSLTKLTLPSSLLPTVE--YVEDQRSGLSTQRFLNVFNPLNRNNGSSTRAQVLNDTSKIWVPTNPRGAERLPPKIVRAESDFYLRRLWGNPNEDLTSQPKYLVTFTVGYDQKNNINAAIKKFSDNFTIVLFHYDGRTTEWNEFEWSKRAIHVSV 204
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BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: M5XDJ1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006602mg PE=4 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.819e-62
Identity = 130/187 (69.52%), Postives = 145/187 (77.54%), Query Frame = 1 
Query:  391 STVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQ-------HPIDNNRSSANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            S   RKPNE+MRLIVTTFVGVVFGFLIG+SFP LSLTK N+SS +L  +D+ Y E   S  S  T L        +       S+N T + IWVPSNPRGAERLPPGI+ AESD YLRRLWGKP+EDLT  P+YLVTFTVG NQ+KNIDAAVKKFS NFTILLFHYDGQTTEWDEFEWS++AIHVSV
Sbjct:    2 SAGGRKPNETMRLIVTTFVGVVFGFLIGVSFPTLSLTKLNLSSSLLPNVDLTYNEDQKSDISRQTILNAWSSTRSNNSSTKAQSSNGTGR-IWVPSNPRGAERLPPGILAAESDFYLRRLWGKPSEDLTIKPRYLVTFTVGLNQKKNIDAAVKKFSENFTILLFHYDGQTTEWDEFEWSERAIHVSV 187
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BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: G7J360_MEDTR (Lysine ketoglutarate reductase trans-splicing protein OS=Medicago truncatula GN=MTR_3g086610 PE=4 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.187e-62
Identity = 131/193 (67.88%), Postives = 148/193 (76.68%), Query Frame = 1 
Query:  373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTE--YTNSVPSGSTPLQHPIDNNRSS-----ANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            MG  TRS   RKP+E MRLIVTTF+GVVFGF +G+SFP LSLTKFN+ SG+L +ID+ Y E  YT     G        ++NR +     +N TSK IWVPSNPRGAE LPPGIV+AESD YLRRLWGKP+EDLT  PKYLVTFTVGY  +KNIDAAVKKFS NFTILLFHYDG+  EWDEFEWSK+AIHVS 
Sbjct:    1 MGTVTRSPNGRKPSEIMRLIVTTFIGVVFGFFLGVSFPTLSLTKFNLPSGLLPSIDLSYIEERYT-----GRRAWSFINNSNRRALPNRLSNDTSK-IWVPSNPRGAESLPPGIVEAESDFYLRRLWGKPSEDLTFKPKYLVTFTVGYEMKKNIDAAVKKFSENFTILLFHYDGRANEWDEFEWSKKAIHVSA 187
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BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: I3T4D1_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 2.331e-62
Identity = 131/193 (67.88%), Postives = 148/193 (76.68%), Query Frame = 1 
Query:  373 MGIFTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTE--YTNSVPSGSTPLQHPIDNNRSS-----ANATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            MG  TRS   RKP+E MRLIVTTF+GVVFGF +G+SFP LSLTKFN+ SG+L +ID+ Y E  YT     G        ++NR +     +N TSK IWVPSNPRGAE LPPGIV+AESD YLRRLWGKP+EDLT  PKYLVTFTVGY  +KNIDAAVKKFS NFTILLFHYDG+  EWDEFEWSK+AIHVS 
Sbjct:    1 MGTVTRSPNGRKPSEIMRLIVTTFIGVVFGFFLGVSFPTLSLTKFNLPSGLLPSIDLSYIEERYT-----GRRAWSFINNSNRRALPNRLSNDTSK-IWVPSNPRGAESLPPGIVEAESDFYLRRLWGKPSEDLTFKPKYLVTFTVGYEMKKNIDAAVKKFSENFTILLFHYDGRANEWDEFEWSKKAIHVSA 187
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BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Match: F6GVL9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0137g00770 PE=4 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.550e-62
Identity = 128/188 (68.09%), Postives = 144/188 (76.60%), Query Frame = 1 
Query:  382 FTRSTVSRKPNESMRXXXXXXXXXXXXXXXXXSFPKLSLTKFNISSGILTTIDIKYTEYTNSVPSGSTPLQ--HPIDNNRSSA---NATSKKIWVPSNPRGAERLPPGIVKAESDLYLRRLWGKPNEDLTSTPKYLVTFTVGYNQRKNIDAAVKKFSGNFTILLFHYDGQTTEWDEFEWSKQAIHVSV 930
            F    + RKPNE+MRLIVT  VGVVFGFLIG+SFP LS+TK N+ S +L  +DI Y    +S  S    L        NR+ A   N TSK IW PSNPRGAERLPPGIV AESD YLRRLWGKP+EDLT  PKYLVTFTVGY+Q+KN+DAAVKKFS +FTILLFHYDG+TTEWDEFEWSK+AIHVSV
Sbjct:   43 FPAGVIVRKPNETMRLIVTISVGVVFGFLIGISFPTLSITKLNLPSSLLPNVDIAYIRDKSSGFSTQALLDALSSAKYNRTQAQNLNGTSK-IWAPSNPRGAERLPPGIVAAESDFYLRRLWGKPSEDLTIKPKYLVTFTVGYDQKKNVDAAVKKFSEDFTILLFHYDGRTTEWDEFEWSKRAIHVSV 229
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V4SUF0_9ROSI1.477e-6265.50Uncharacterized protein OS=Citrus clementina GN=CI... [more]
M5XDJ1_PRUPE1.819e-6269.52Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
G7J360_MEDTR2.187e-6267.88Lysine ketoglutarate reductase trans-splicing prot... [more]
I3T4D1_MEDTR2.331e-6267.88Uncharacterized protein OS=Medicago truncatula PE=... [more]
F6GVL9_VITVI5.550e-6268.09Putative uncharacterized protein OS=Vitis vinifera... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011260 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011260 ID=g.arboreum_cottongen_reftransV1_0011260; Name=g.arboreum_cottongen_reftransV1_0011260; organism=Gossypium arboreum; type=contig; length=932bp
TTCAGGTCTTTTTTCCTTCACGTTTTCTATATTTTTTTTTCTGTTAGTAA
GGCAATCAAGAAGTTCGTTCTCTCAATTCTCTCAATTCTCGAGAGAGAAG
CATAAACTTATTTCTTGCATATTTTCAGTTAAAGAGGAGAAGGTGATTTT
TCTCGTGATTTAGAGCCATTTTAAATACAGTTTCAGTTTCCATCAGATCC
TTTTCAGTTGTTCTCAATTATCTTTCCATTCAGGTCCTTTTGCTGAGGGT
CTCTCTTTGTTTCATGGAGAATGGGCAACTGAATGCCTGCTAATTAATGC
TCAAAGCCTCTTGCAATCTGAATTGCCCATAGTTTGTTGTGAATATACAA
TTCAGACGAATTTTTAAATAGAATGGGGATCTTTACACGCAGTACGGTTA
GTAGAAAGCCAAATGAGAGCATGAGGCTTATTGTGACAACATTTGTTGGA
GTAGTTTTTGGCTTCTTAATTGGATTATCTTTCCCAAAATTGTCATTAAC
AAAGTTCAATATATCATCTGGCATTCTTACGACCATTGATATCAAATACA
CTGAATATACCAACTCAGTCCCCTCAGGCTCAACTCCTTTGCAGCATCCG
ATTGATAATAATAGAAGCTCTGCTAATGCCACATCAAAGAAGATTTGGGT
CCCATCAAATCCTCGAGGTGCGGAAAGACTACCACCTGGAATTGTTAAAG
CTGAATCAGACTTATACTTACGCAGATTGTGGGGCAAGCCGAATGAGGAC
TTGACCAGCACTCCAAAGTATCTTGTCACATTTACTGTTGGCTATAATCA
ACGAAAGAATATTGATGCTGCAGTTAAAAAGTTTTCAGGGAATTTTACCA
TCCTTCTCTTTCATTACGATGGTCAAACAACTGAATGGGATGAGTTTGAG
TGGTCAAAGCAGGCAATACATGTGAGTGTTCG
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