g.arboreum_cottongen_reftransV1_0002948, g.arboreum_cottongen_reftransV1_0002948 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0002948
Unique Nameg.arboreum_cottongen_reftransV1_0002948
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length713
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0002948:1..713 .
Chr7:87591985..87593540 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: A0A067H2K1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001211mg PE=4 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.767e-64
Identity = 138/266 (51.88%), Postives = 167/266 (62.78%), Query Frame = 2
Query:    2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPAT--TQMGAAVPPSSP-----------SVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQ------------------------PQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPST 685
            AG  QDQFE +F++ADLDGDGRISG EAV+FFQGS L KQVLAQIW +AD +H+ +L +QEF+NALKLVTVAQ +RELTPDIVKAALYGPAA KIP PQIN  AT   Q+ +    S P           + GFRGPG PN    QQ        S+RP Q  P     HP+QG   P+FSRGG+++GQ                        PQ+MPA ++P   QSMP    G ++ N N+SS+WLSG  GGASTG R ++PST
Sbjct:    2 AGPNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPDIVKAALYGPAATKIPPPQINLSATPAQQINSTAAVSVPQMSVPTQMAPQNFGFRGPGAPNVSQVQQQ-------SIRPYQAAP-----HPTQGSVGPDFSRGGSVMGQTQVMPGSTAPRPPQTMPAGTAPRPPQSMPASTSPHPPQSMPESTAGLNVPNSNISSDWLSGGAGGASTGSRAISPST 255          
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: I1JST7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 3.262e-64
Identity = 128/244 (52.46%), Postives = 155/244 (63.52%), Query Frame = 2
Query:    2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPA--------------TTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPSTA 688
            AG   DQFE +F++ADLDGDGRISG EAVSFFQGS L KQVLAQ+WAYADQ+ +GFL + EFFNAL+LVTVAQ +R+LTPDIVKAALYGPAAAKIPAPQIN  A                QMG   P  + S  +RG G+   G + Q++PSQQ+  MRP Q+MPA   L P QG+A P+ SRG NI G             + S P V          +S++W + RPG  +T P G+ PS A
Sbjct:    2 AGPNMDQFEAFFRRADLDGDGRISGAEAVSFFQGSNLPKQVLAQVWAYADQAKTGFLGRAEFFNALRLVTVAQSKRDLTPDIVKAALYGPAAAKIPAPQINLAAVPQPRPNSMPGAGSVGQMGVTAPNLAQSFPYRGQGLAGPGANPQYYPSQQHPGMRPPQSMPAGGGLRPQQGVAGPDISRGVNIAGH------------NFSNPGV----------VSNDWNNVRPGMVATRPAGLTPSAA 223          
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: V7AUX4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G012300g PE=4 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 3.783e-64
Identity = 123/237 (51.90%), Postives = 151/237 (63.71%), Query Frame = 2
Query:   17 DQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPATT------------QMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPSTA 688
            DQFE YF++ADLDGDGRISG EAVSFF GS L KQVLAQ+WAYADQ+ +GFL + EFFNAL+LVTVAQ RR+LTPDIVKAALYGPAAAKIPAPQIN  A +            QMG   P S+    +RG G+   G S Q++P QQN ++RP Q+MP   A  P QG+A P+ SRG N+ G                        + +N  +S++W + RPG  +T P G+ PS A
Sbjct:    7 DQFETYFRRADLDGDGRISGAEAVSFFLGSNLPKQVLAQVWAYADQAKTGFLGRAEFFNALRLVTVAQSRRDLTPDIVKAALYGPAAAKIPAPQINLAAVSQPVPRPSAGSVGQMGVTGPNSAQGFAYRGQGLAGPGASPQYYPPQQNPAIRPHQSMPVTGAARPQQGVAGPDISRGVNMGGH-----------------------NFSNPGLSNDWNNARPGMVATRPPGMNPSAA 220          
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: W9QWW3_9ROSA (Uncharacterized calcium-binding protein OS=Morus notabilis GN=L484_024866 PE=4 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 2.431e-62
Identity = 130/253 (51.38%), Postives = 154/253 (60.87%), Query Frame = 2
Query:    2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPATT-------------QMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPSTAP--RPQAAVS 712
            AG   DQFE YF+KADLDGDGRISG EAV+FFQGS L KQVLAQIW +ADQ+ +GFL + EF+NAL+LVTVAQ +RELTPDIVKAALYGPAAAKIPAPQIN PA +             QMG+  PPS  S GF GP V N  ++Q +FP QQ+ S+RP                              PQAMP  S              P++ N ++S+ WLSGR G    GPRG++P  +P  RPQA VS
Sbjct:    2 AGPNMDQFEAYFRKADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADQTKTGFLGRAEFYNALRLVTVAQSKRELTPDIVKAALYGPAAAKIPAPQINLPAVSAPQPNSIGVVSAPQMGSVAPPSQ-SFGFSGPVVANPNINQNYFPPQQSQSVRP------------------------------PQAMPTVSM-----------VAPNVQNTSISNEWLSGRAGVPPNGPRGISPMPSPALRPQAPVS 212          
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: Q0WTU8_ARATH (Putative uncharacterized protein At1g20760 OS=Arabidopsis thaliana GN=At1g20760 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.007e-58
Identity = 119/219 (54.34%), Postives = 146/219 (66.67%), Query Frame = 2
Query:    2 AGQT--QDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINF---------PATTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSS 622
            AGQ    DQFE YFK+ADLDGDGRISG EAV FFQGSGLSKQVLAQIW+ +D+SHSGFL +Q F+N+L+LVTVAQ +R+LTP+IV AAL  PAAAKIP P+IN          PA T +G       P  GF GPG PNA ++Q +FP QQN  MRP Q +   T+L P+ G   PE+ R   + GQ Q +P GS     Q +PT  +GP  +  N++S
Sbjct:    2 AGQNPNMDQFEAYFKRADLDGDGRISGAEAVGFFQGSGLSKQVLAQIWSLSDRSHSGFLDRQNFYNSLRLVTVAQSKRDLTPEIVNAALNTPAAAKIPPPKINLSAIPAPRPNPAATTVG-------PVSGFGGPGAPNAIVNQNYFPPQQNQQMRPNQGISGLTSLRPAAG---PEY-RPSALSGQFQPVPVGSVTHPPQPVPTSVSGPGSSTFNLNS 209          
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EHD2_ARATH (EH domain-containing protein 2 OS=Arabidopsis thaliana GN=EHD2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.875e-16
Identity = 62/219 (28.31%), Postives = 94/219 (42.92%), Query Frame = 2
Query:    8 QTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQR-RELTPDIVKAALYGPAAAKIPAPQINFPATTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTG 661
            + Q  ++ +F  AD DGDGR+SG +A  FF  S LS+Q L Q+WA AD    GFL   EF  A+KLV++AQ   E+T D++K +        I    +  P    +   V                  +S+ +   + N+  +PQ T  A T    S+ I  P+ +    + G  +       PL           P LT+ +  +  +    G  STG
Sbjct:   15 EHQKIYKEWFNIADSDGDGRVSGNDATKFFAMSKLSRQELKQVWAVADSKRQGFLGLSEFITAMKLVSLAQEGHEITSDLLKGS--------IDMKSVELPVLEGLENVVSKQK--------------VSKTNVDVEDNVVTKPQVT--AKTPWFKSKSIIKPQVNVVTIVDGLKRLYTEKLKPLEVTYRFNDFASPVLTSSDFDAKPMVMLLGQYSTG 209          
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EHD1_ARATH (EH domain-containing protein 1 OS=Arabidopsis thaliana GN=EHD1 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.931e-11
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 2
Query:    8 QTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220
            + Q  ++ +F+ +D DGDGRI+G +A+ FF  S L +  L QIWA AD    G+L  +EF  A++LV++AQ
Sbjct:   14 ENQMIYKEWFEFSDSDGDGRITGNDAIKFFTMSNLPRPELKQIWAIADSKRQGYLGFKEFIVAMQLVSLAQ 84          
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: YHLA_SCHPO (Uncharacterized calcium-binding protein C800.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC800.10c PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.101e-10
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 2
Query:    2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQRR 226
            + + Q  F+  FK AD    G I+G EAV F + SGL+ QVL QIW  AD  + GFL+   F  A++LV +AQ +
Sbjct:    6 SAEEQTAFDQLFKIADKQDIGVITGEEAVPFLEKSGLAPQVLGQIWQIADAENRGFLTFSGFVIAMRLVALAQEK 80          
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EPS15_HUMAN (Epidermal growth factor receptor substrate 15 OS=Homo sapiens GN=EPS15 PE=1 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 2.367e-10
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 2
Query:   23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220
            +E Y+++ D    GR+   +A +F + SGL   +L +IW  AD    G L+KQEFF AL+LV  AQ
Sbjct:   19 YEKYYRQVDTGNTGRVLASDAAAFLKKSGLPDLILGKIWDLADTDGKGILNKQEFFVALRLVACAQ 84          
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EPS15_MOUSE (Epidermal growth factor receptor substrate 15 OS=Mus musculus GN=Eps15 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.565e-10
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 2
Query:   23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220
            +E Y+++ +    GR+  ++A +F + SGL   +L +IW  AD    G LSKQEFF AL+LV  AQ
Sbjct:   19 YEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQ 84          
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EP15R_HUMAN (Epidermal growth factor receptor substrate 15-like 1 OS=Homo sapiens GN=EPS15L1 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.003e-9
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 2
Query:   23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220
            +E Y+K+ D    GR+   EA  F + SGLS  +L +IW  AD    GFL KQ F+ AL+LV  AQ
Sbjct:   19 YESYYKQVDPAYTGRVGASEAALFLKKSGLSDIILGKIWDLADPEGKGFLDKQGFYVALRLVACAQ 84          

HSP 2 Score: 61.2326 bits (147), Expect = 1.633e-9
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 2
Query:   20 QFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQR--------RELTPDIV 247
            +F+  F K DLD DG +SG E    F  SGL++ +LA IWA AD   +G LSK +F  AL +  + Q+        + L+PD+V
Sbjct:  278 RFDEIFLKTDLDLDGYVSGQEVKEIFMHSGLTQNLLAHIWALADTRQTGKLSKDQF--ALAMYFIQQKVSKGIDPPQVLSPDMV 359          
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EP15R_MOUSE (Epidermal growth factor receptor substrate 15-like 1 OS=Mus musculus GN=Eps15l1 PE=1 SV=3)

HSP 1 Score: 61.6178 bits (148), Expect = 1.229e-9
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   20 QFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQR--------RELTPDIV 247
            +F+  F K DLD DG +SG E    F  SGL++ +LA IWA AD   +G LSK++F  AL +  + Q+        + L+PD+V
Sbjct:  276 RFDEIFLKTDLDLDGYVSGQEVKEIFMHSGLTQNLLAHIWALADTRQTGKLSKEQF--ALAMYFIQQKVSKGIDPPQVLSPDMV 357          

HSP 2 Score: 61.2326 bits (147), Expect = 1.547e-9
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 2
Query:   23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220
            +E Y+K+ D    GR+   EA  F + SGLS  +L +IW  AD    GFL KQ F+ AL+LV  AQ
Sbjct:   19 YESYYKQVDPAYTGRVGASEAALFLKKSGLSDIILGKIWDLADPEGKGFLDKQGFYVALRLVACAQ 84          
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EPS15_DICDI (Epidermal growth factor receptor substrate 15 homolog OS=Dictyostelium discoideum GN=eps15 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 7.589e-9
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 2
Query:   23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220
            +E  F+ AD+D DG I G+   SFF+ S LS  +L  IW  +D  ++G+L+  +FF ALKLV++AQ
Sbjct:   15 YEELFQIADVDKDGVI-GLNDASFFRNSMLSNDILRDIWQLSD-VNNGYLNIDDFFVALKLVSLAQ 78          
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: ITSN2_HUMAN (Intersectin-2 OS=Homo sapiens GN=ITSN2 PE=1 SV=3)

HSP 1 Score: 54.299 bits (129), Expect = 3.697e-7
Identity = 51/177 (28.81%), Postives = 78/177 (44.07%), Query Frame = 2
Query:   62 GRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQRRELTPDIVKAALYGPAAAKIPAPQINFPATTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATG 592
            G I+G +A +FF  SGL   VLA+IWA +D +  G + +QEF  A+KL+ +  + +  P ++   +  P     P     F   +    ++P   P      P  P   +S     S  NL   P   MP  T L PS  ++      G   + QP  +P  S+ L H S  ++  G
Sbjct:   38 GYITGDQARNFFLQSGLPAPVLAEIWALSDLNKDGKMDQQEFSIAMKLIKLKLQGQQLPVVLPPIMKQPPMFS-PLISARFGMGSMPNLSIPQPLP------PAAPITSLSSA--TSGTNL---PPLMMP--TPLVPS--VSTSSLPNGTASLIQPLPIPYSSSTLPHGSSYSLMMG 198          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067H2K1_CITSI2.767e-6451.88Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
I1JST7_SOYBN3.262e-6452.46Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
V7AUX4_PHAVU3.783e-6451.90Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
W9QWW3_9ROSA2.431e-6251.38Uncharacterized calcium-binding protein OS=Morus n... [more]
Q0WTU8_ARATH1.007e-5854.34Putative uncharacterized protein At1g20760 OS=Arab... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
EHD2_ARATH3.875e-1628.31EH domain-containing protein 2 OS=Arabidopsis thal... [more]
EHD1_ARATH5.931e-1143.66EH domain-containing protein 1 OS=Arabidopsis thal... [more]
YHLA_SCHPO1.101e-1044.00Uncharacterized calcium-binding protein C800.10c O... [more]
EPS15_HUMAN2.367e-1042.42Epidermal growth factor receptor substrate 15 OS=H... [more]
EPS15_MOUSE3.565e-1042.42Epidermal growth factor receptor substrate 15 OS=M... [more]
EP15R_HUMAN1.003e-945.45Epidermal growth factor receptor substrate 15-like... [more]
EP15R_MOUSE1.229e-940.48Epidermal growth factor receptor substrate 15-like... [more]
EPS15_DICDI7.589e-945.45Epidermal growth factor receptor substrate 15 homo... [more]
ITSN2_HUMAN3.697e-728.81Intersectin-2 OS=Homo sapiens GN=ITSN2 PE=1 SV=3[more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011992EF-hand domain pairGENE3D1.10.238.10coord: 2..54
e-value: 1.0E-15
score: 56.7
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 2..43
NoneNo IPR availablePANTHERPTHR11216:SF72CALCIUM-BINDING EF HAND-CONTAINING PROTEINcoord: 4..161
NoneNo IPR availablePANTHERPTHR11216EH DOMAINcoord: 4..161
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 14..26
IPR000261EH domainPROSITEPS50031EHcoord: 1..57
score: 10.429
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 1..36
score: 10.134

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0002948 ID=g.arboreum_cottongen_reftransV1_0002948; Name=g.arboreum_cottongen_reftransV1_0002948; organism=Gossypium arboreum; type=contig; length=713bp
GGCGGGGCAAACTCAGGATCAATTCGAAGTTTACTTCAAGAAAGCAGATT
TAGATGGGGATGGCAGAATTAGTGGAGTTGAGGCTGTTTCTTTCTTTCAA
GGATCCGGTTTGTCCAAACAAGTCCTCGCTCAGATATGGGCATATGCTGA
CCAAAGTCATAGTGGTTTCCTGAGCAAGCAAGAGTTTTTTAATGCTCTCA
AGCTTGTGACCGTAGCACAAAGGCGTGAATTAACACCAGACATTGTCAAG
GCAGCATTATATGGCCCTGCTGCAGCAAAAATTCCAGCTCCGCAAATTAA
TTTTCCTGCCACAACACAGATGGGTGCAGCTGTGCCACCATCCTCTCCAA
GTGTTGGGTTCAGAGGACCAGGAGTTCCAAATGCTGGTATGAGCCAGCAA
CATTTTCCATCTCAACAGAACCTCTCAATGAGACCCCAACAAACAATGCC
TGCTGCTACTGCCCTGCACCCTTCTCAAGGTATTGCAGCTCCAGAGTTTT
CTAGGGGAGGTAATATAGTTGGTCAACCTCAAGCTATGCCTGCTGGTTCT
ACTCCACTTTCACATCAATCCATGCCCACCGTTGCTACTGGTCCCAGTTT
AACAAATCAAAATATGTCTAGCAATTGGCTTTCTGGAAGGCCTGGTGGAG
CTTCAACTGGGCCACGAGGGGTCGCTCCATCAACAGCACCAAGGCCACAA
GCTGCAGTTTCAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR000261EH_dom
IPR002048EF_hand_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005509calcium ion binding