g.arboreum_cottongen_reftransV1_0002948, g.arboreum_cottongen_reftransV1_0002948 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: A0A067H2K1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001211mg PE=4 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 2.767e-64 Identity = 138/266 (51.88%), Postives = 167/266 (62.78%), Query Frame = 2 Query: 2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPAT--TQMGAAVPPSSP-----------SVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQ------------------------PQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPST 685 AG QDQFE +F++ADLDGDGRISG EAV+FFQGS L KQVLAQIW +AD +H+ +L +QEF+NALKLVTVAQ +RELTPDIVKAALYGPAA KIP PQIN AT Q+ + S P + GFRGPG PN QQ S+RP Q P HP+QG P+FSRGG+++GQ PQ+MPA ++P QSMP G ++ N N+SS+WLSG GGASTG R ++PST Sbjct: 2 AGPNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPDIVKAALYGPAATKIPPPQINLSATPAQQINSTAAVSVPQMSVPTQMAPQNFGFRGPGAPNVSQVQQQ-------SIRPYQAAP-----HPTQGSVGPDFSRGGSVMGQTQVMPGSTAPRPPQTMPAGTAPRPPQSMPASTSPHPPQSMPESTAGLNVPNSNISSDWLSGGAGGASTGSRAISPST 255
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: I1JST7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 3.262e-64 Identity = 128/244 (52.46%), Postives = 155/244 (63.52%), Query Frame = 2 Query: 2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPA--------------TTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPSTA 688 AG DQFE +F++ADLDGDGRISG EAVSFFQGS L KQVLAQ+WAYADQ+ +GFL + EFFNAL+LVTVAQ +R+LTPDIVKAALYGPAAAKIPAPQIN A QMG P + S +RG G+ G + Q++PSQQ+ MRP Q+MPA L P QG+A P+ SRG NI G + S P V +S++W + RPG +T P G+ PS A Sbjct: 2 AGPNMDQFEAFFRRADLDGDGRISGAEAVSFFQGSNLPKQVLAQVWAYADQAKTGFLGRAEFFNALRLVTVAQSKRDLTPDIVKAALYGPAAAKIPAPQINLAAVPQPRPNSMPGAGSVGQMGVTAPNLAQSFPYRGQGLAGPGANPQYYPSQQHPGMRPPQSMPAGGGLRPQQGVAGPDISRGVNIAGH------------NFSNPGV----------VSNDWNNVRPGMVATRPAGLTPSAA 223
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: V7AUX4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G012300g PE=4 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 3.783e-64 Identity = 123/237 (51.90%), Postives = 151/237 (63.71%), Query Frame = 2 Query: 17 DQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPATT------------QMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPSTA 688 DQFE YF++ADLDGDGRISG EAVSFF GS L KQVLAQ+WAYADQ+ +GFL + EFFNAL+LVTVAQ RR+LTPDIVKAALYGPAAAKIPAPQIN A + QMG P S+ +RG G+ G S Q++P QQN ++RP Q+MP A P QG+A P+ SRG N+ G + +N +S++W + RPG +T P G+ PS A Sbjct: 7 DQFETYFRRADLDGDGRISGAEAVSFFLGSNLPKQVLAQVWAYADQAKTGFLGRAEFFNALRLVTVAQSRRDLTPDIVKAALYGPAAAKIPAPQINLAAVSQPVPRPSAGSVGQMGVTGPNSAQGFAYRGQGLAGPGASPQYYPPQQNPAIRPHQSMPVTGAARPQQGVAGPDISRGVNMGGH-----------------------NFSNPGLSNDWNNARPGMVATRPPGMNPSAA 220
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: W9QWW3_9ROSA (Uncharacterized calcium-binding protein OS=Morus notabilis GN=L484_024866 PE=4 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 2.431e-62 Identity = 130/253 (51.38%), Postives = 154/253 (60.87%), Query Frame = 2 Query: 2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPATT-------------QMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPSTAP--RPQAAVS 712 AG DQFE YF+KADLDGDGRISG EAV+FFQGS L KQVLAQIW +ADQ+ +GFL + EF+NAL+LVTVAQ +RELTPDIVKAALYGPAAAKIPAPQIN PA + QMG+ PPS S GF GP V N ++Q +FP QQ+ S+RP PQAMP S P++ N ++S+ WLSGR G GPRG++P +P RPQA VS Sbjct: 2 AGPNMDQFEAYFRKADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADQTKTGFLGRAEFYNALRLVTVAQSKRELTPDIVKAALYGPAAAKIPAPQINLPAVSAPQPNSIGVVSAPQMGSVAPPSQ-SFGFSGPVVANPNINQNYFPPQQSQSVRP------------------------------PQAMPTVSM-----------VAPNVQNTSISNEWLSGRAGVPPNGPRGISPMPSPALRPQAPVS 212
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: Q0WTU8_ARATH (Putative uncharacterized protein At1g20760 OS=Arabidopsis thaliana GN=At1g20760 PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.007e-58 Identity = 119/219 (54.34%), Postives = 146/219 (66.67%), Query Frame = 2 Query: 2 AGQT--QDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINF---------PATTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSS 622 AGQ DQFE YFK+ADLDGDGRISG EAV FFQGSGLSKQVLAQIW+ +D+SHSGFL +Q F+N+L+LVTVAQ +R+LTP+IV AAL PAAAKIP P+IN PA T +G P GF GPG PNA ++Q +FP QQN MRP Q + T+L P+ G PE+ R + GQ Q +P GS Q +PT +GP + N++S Sbjct: 2 AGQNPNMDQFEAYFKRADLDGDGRISGAEAVGFFQGSGLSKQVLAQIWSLSDRSHSGFLDRQNFYNSLRLVTVAQSKRDLTPEIVNAALNTPAAAKIPPPKINLSAIPAPRPNPAATTVG-------PVSGFGGPGAPNAIVNQNYFPPQQNQQMRPNQGISGLTSLRPAAG---PEY-RPSALSGQFQPVPVGSVTHPPQPVPTSVSGPGSSTFNLNS 209
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EHD2_ARATH (EH domain-containing protein 2 OS=Arabidopsis thaliana GN=EHD2 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 3.875e-16 Identity = 62/219 (28.31%), Postives = 94/219 (42.92%), Query Frame = 2 Query: 8 QTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQR-RELTPDIVKAALYGPAAAKIPAPQINFPATTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTG 661 + Q ++ +F AD DGDGR+SG +A FF S LS+Q L Q+WA AD GFL EF A+KLV++AQ E+T D++K + I + P + V +S+ + + N+ +PQ T A T S+ I P+ + + G + PL P LT+ + + + G STG Sbjct: 15 EHQKIYKEWFNIADSDGDGRVSGNDATKFFAMSKLSRQELKQVWAVADSKRQGFLGLSEFITAMKLVSLAQEGHEITSDLLKGS--------IDMKSVELPVLEGLENVVSKQK--------------VSKTNVDVEDNVVTKPQVT--AKTPWFKSKSIIKPQVNVVTIVDGLKRLYTEKLKPLEVTYRFNDFASPVLTSSDFDAKPMVMLLGQYSTG 209
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EHD1_ARATH (EH domain-containing protein 1 OS=Arabidopsis thaliana GN=EHD1 PE=1 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 5.931e-11 Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 2 Query: 8 QTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220 + Q ++ +F+ +D DGDGRI+G +A+ FF S L + L QIWA AD G+L +EF A++LV++AQ Sbjct: 14 ENQMIYKEWFEFSDSDGDGRITGNDAIKFFTMSNLPRPELKQIWAIADSKRQGYLGFKEFIVAMQLVSLAQ 84
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: YHLA_SCHPO (Uncharacterized calcium-binding protein C800.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC800.10c PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.101e-10 Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 2 Query: 2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQRR 226 + + Q F+ FK AD G I+G EAV F + SGL+ QVL QIW AD + GFL+ F A++LV +AQ + Sbjct: 6 SAEEQTAFDQLFKIADKQDIGVITGEEAVPFLEKSGLAPQVLGQIWQIADAENRGFLTFSGFVIAMRLVALAQEK 80
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EPS15_HUMAN (Epidermal growth factor receptor substrate 15 OS=Homo sapiens GN=EPS15 PE=1 SV=2) HSP 1 Score: 63.5438 bits (153), Expect = 2.367e-10 Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 2 Query: 23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220 +E Y+++ D GR+ +A +F + SGL +L +IW AD G L+KQEFF AL+LV AQ Sbjct: 19 YEKYYRQVDTGNTGRVLASDAAAFLKKSGLPDLILGKIWDLADTDGKGILNKQEFFVALRLVACAQ 84
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EPS15_MOUSE (Epidermal growth factor receptor substrate 15 OS=Mus musculus GN=Eps15 PE=1 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 3.565e-10 Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 2 Query: 23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220 +E Y+++ + GR+ ++A +F + SGL +L +IW AD G LSKQEFF AL+LV AQ Sbjct: 19 YEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQ 84
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EP15R_HUMAN (Epidermal growth factor receptor substrate 15-like 1 OS=Homo sapiens GN=EPS15L1 PE=1 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 1.003e-9 Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 2 Query: 23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220 +E Y+K+ D GR+ EA F + SGLS +L +IW AD GFL KQ F+ AL+LV AQ Sbjct: 19 YESYYKQVDPAYTGRVGASEAALFLKKSGLSDIILGKIWDLADPEGKGFLDKQGFYVALRLVACAQ 84 HSP 2 Score: 61.2326 bits (147), Expect = 1.633e-9 Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 2 Query: 20 QFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQR--------RELTPDIV 247 +F+ F K DLD DG +SG E F SGL++ +LA IWA AD +G LSK +F AL + + Q+ + L+PD+V Sbjct: 278 RFDEIFLKTDLDLDGYVSGQEVKEIFMHSGLTQNLLAHIWALADTRQTGKLSKDQF--ALAMYFIQQKVSKGIDPPQVLSPDMV 359
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EP15R_MOUSE (Epidermal growth factor receptor substrate 15-like 1 OS=Mus musculus GN=Eps15l1 PE=1 SV=3) HSP 1 Score: 61.6178 bits (148), Expect = 1.229e-9 Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 2 Query: 20 QFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQR--------RELTPDIV 247 +F+ F K DLD DG +SG E F SGL++ +LA IWA AD +G LSK++F AL + + Q+ + L+PD+V Sbjct: 276 RFDEIFLKTDLDLDGYVSGQEVKEIFMHSGLTQNLLAHIWALADTRQTGKLSKEQF--ALAMYFIQQKVSKGIDPPQVLSPDMV 357 HSP 2 Score: 61.2326 bits (147), Expect = 1.547e-9 Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 2 Query: 23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220 +E Y+K+ D GR+ EA F + SGLS +L +IW AD GFL KQ F+ AL+LV AQ Sbjct: 19 YESYYKQVDPAYTGRVGASEAALFLKKSGLSDIILGKIWDLADPEGKGFLDKQGFYVALRLVACAQ 84
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EPS15_DICDI (Epidermal growth factor receptor substrate 15 homolog OS=Dictyostelium discoideum GN=eps15 PE=1 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 7.589e-9 Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 2 Query: 23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220 +E F+ AD+D DG I G+ SFF+ S LS +L IW +D ++G+L+ +FF ALKLV++AQ Sbjct: 15 YEELFQIADVDKDGVI-GLNDASFFRNSMLSNDILRDIWQLSD-VNNGYLNIDDFFVALKLVSLAQ 78
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: ITSN2_HUMAN (Intersectin-2 OS=Homo sapiens GN=ITSN2 PE=1 SV=3) HSP 1 Score: 54.299 bits (129), Expect = 3.697e-7 Identity = 51/177 (28.81%), Postives = 78/177 (44.07%), Query Frame = 2 Query: 62 GRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQRRELTPDIVKAALYGPAAAKIPAPQINFPATTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATG 592 G I+G +A +FF SGL VLA+IWA +D + G + +QEF A+KL+ + + + P ++ + P P F + ++P P P P +S S NL P MP T L PS ++ G + QP +P S+ L H S ++ G Sbjct: 38 GYITGDQARNFFLQSGLPAPVLAEIWALSDLNKDGKMDQQEFSIAMKLIKLKLQGQQLPVVLPPIMKQPPMFS-PLISARFGMGSMPNLSIPQPLP------PAAPITSLSSA--TSGTNL---PPLMMP--TPLVPS--VSTSSLPNGTASLIQPLPIPYSSSTLPHGSSYSLMMG 198 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 9
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002948 ID=g.arboreum_cottongen_reftransV1_0002948; Name=g.arboreum_cottongen_reftransV1_0002948; organism=Gossypium arboreum; type=contig; length=713bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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