g.arboreum_cottongen_reftransV1_0002948, g.arboreum_cottongen_reftransV1_0002948 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0002948
Unique Name	g.arboreum_cottongen_reftransV1_0002948
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	713

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr7	chromosome	g.arboreum_cottongen_reftransV1_0002948:1..713 . Chr7:87591985..87593540 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: F6I6U0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g01080 PE=4 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.525e-69
Identity = 134/243 (55.14%), Postives = 160/243 (65.84%), Query Frame = 2

Query:   23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPA---------TT----QMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGP------RGVAPSTAP 691
            F+ YF++ADLDGDGRISG EAV+FFQGS L+K VLAQ+W +AD + +GFL + EF+NALKLVTVAQ +RELTPDIVKAALYGPAAAKIPAPQIN  A         TT    QMGA  P +S ++GFRG  +PN   +QQ+FPSQQN  MRP Q MPA +A  P Q +A PE +RGGN+V                       GP + N N+SS+WLSGR  GA TGP      RG+ PS  P
Sbjct:    4 FDAYFRRADLDGDGRISGAEAVAFFQGSNLAKHVLAQVWMHADPAGTGFLGRAEFYNALKLVTVAQSKRELTPDIVKAALYGPAAAKIPAPQINLAAIPSPQPNQMTTTPAPQMGAVAPTASQNLGFRGQTLPNPSTNQQYFPSQQNQFMRPPQPMPAGSASRPPQNLAGPELNRGGNMV-----------------------GPGVPNSNISSDWLSGRTAGAPTGPLSQVPNRGITPSMPP 223

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BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: M5WEZ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000751mg PE=4 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 2.341e-68
Identity = 137/257 (53.31%), Postives = 159/257 (61.87%), Query Frame = 2

Query:    2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPATT-------------QMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATG---PSLTNQNMSSNWLSGRPGGASTGPRGVA---PSTAPRPQAAVS 712
            AG   DQ E YFK+ADLDGDGRISG EAV+FFQGS L KQVLAQIW +ADQ+ +GFL + EF+NAL+LVTVAQ +RELTPDIVKAALYGPAAAKIPAPQIN P T+             QMG   PP+S + GFRGPGVPN  M+Q +FP QQN S+RP                              PQA+P G    SH   P    G   PS+ N N+SSNWLSG  G    GPRG++   PS+ P+ Q  VS
Sbjct:    2 AGAYTDQLEAYFKRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADQNKTGFLGRPEFYNALRLVTVAQSKRELTPDIVKAALYGPAAAKIPAPQINLPPTSAPQSNPMAATSAPQMGMGTPPTSQNFGFRGPGVPNTTMNQNYFPPQQNQSLRP------------------------------PQAIPTGMPTGSHSRPPQGVGGMGAPSVLNSNVSSNWLSGSTGTPPAGPRGLSPSVPSSTPKSQPPVS 228

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BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: B9GPR9_POPTR (Calcium-binding EF hand family protein OS=Populus trichocarpa GN=POPTR_0002s00960g PE=4 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 5.324e-67
Identity = 136/236 (57.63%), Postives = 159/236 (67.37%), Query Frame = 2

Query:   17 DQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINF---------PATTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSR------GGNIVGQPQAMPAGSTPLSHQSMPTVATG--PSLTNQNMSSNWLSGRPGGASTGPRG 670
            DQFE YFK+ADLDGDGRISG EAVSFFQGS L KQVLAQIW +ADQS +GFL + EFFNAL+LVTVAQ +R+LTPDIVKAALYGPAAAKIP PQIN           A + MGA  P +S   GFRGPGVPNA M+QQ+FP +   +MRP Q +P  TA  P Q +     SR        ++ G    MP G+TP   Q M   + G  PS++N N+SS+WL GR GGA T P G
Sbjct:    7 DQFEAYFKRADLDGDGRISGAEAVSFFQGSNLPKQVLAQIWMHADQSRTGFLGRPEFFNALRLVTVAQSKRDLTPDIVKAALYGPAAAKIPPPQINLQATAAAPQMAAASPMGAVAPTASQGFGFRGPGVPNATMNQQYFP-RHGQTMRPLQGVPPGTASRPPQVMLTGTASRPPQGMPSSSLGGPSFIMPTGTTPRPPQFMSGGSAGPTPSVSNPNISSDWLGGRTGGAPTSPGG 241

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BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: A0A0B2RPQ8_GLYSO (Putative calcium-binding protein OS=Glycine soja GN=glysoja_013798 PE=4 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.017e-66
Identity = 130/244 (53.28%), Postives = 156/244 (63.93%), Query Frame = 2

Query:    2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPA--------------TTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPSTA 688
            AG   DQFE +F++ADLDGDGRISG EAVSFFQGS L KQVLAQ+WAYADQ+ +GFL + EFFNAL+LVTVAQ +R+LTPDIVKAALYGPAAAKIPAPQIN  A                QMG   P  + S  +RG G+   G + Q++PSQQN  MRP Q+MPA   LHP QG+A P+ SRG NI G             + S P V          +S++W + RPG  +T P G+ PS A
Sbjct:    2 AGPNMDQFEAFFRRADLDGDGRISGAEAVSFFQGSNLPKQVLAQVWAYADQAKTGFLGRAEFFNALRLVTVAQSKRDLTPDIVKAALYGPAAAKIPAPQINLAAVPQPRPNSMPGAGSVGQMGVTAPNLAQSFPYRGQGLAGPGANPQYYPSQQNPGMRPPQSMPAGGGLHPQQGVAGPDISRGVNIAGH------------NFSNPGV----------VSNDWNNVRPGMVATRPAGLTPSAA 223

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BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: I1K7B7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.118e-65
Identity = 126/239 (52.72%), Postives = 153/239 (64.02%), Query Frame = 2

Query:   17 DQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPA--------------TTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPSTA 688
            DQFE +F++ADLDGDGRISG EAVSFFQGS L KQVLAQ+WAYADQ+ +GFL + EFFNAL+LVTVAQ +R+LTPDIVKAALYGPAAAKIPAPQIN  A                QMG   P  + S  +RG G+   G + Q++PSQQN  MRP Q+MPA   LHP QG+A P+ SRG N+ G                        S +N  +S++W + RPG  +T P G+ PS A
Sbjct:    2 DQFESFFRRADLDGDGRISGAEAVSFFQGSNLPKQVLAQVWAYADQAKTGFLGRAEFFNALRLVTVAQSKRDLTPDIVKAALYGPAAAKIPAPQINLAAVPQQRPNSMPGAGSVGQMGVTAPNLAQSFPYRGQGLAGPGANPQYYPSQQNPGMRPPQSMPAGGGLHPQQGVAGPDISRGVNMGGH-----------------------SFSNPGVSNDWNNVRPGMVATRPAGMIPSAA 217

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BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: A0A0B2QIP4_GLYSO (Putative calcium-binding protein OS=Glycine soja GN=glysoja_014682 PE=4 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.317e-65
Identity = 126/239 (52.72%), Postives = 153/239 (64.02%), Query Frame = 2

Query:   17 DQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPA--------------TTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPSTA 688
            DQFE +F++ADLDGDGRISG EAVSFFQGS L KQVLAQ+WAYADQ+ +GFL + EFFNAL+LVTVAQ +R+LTPDIVKAALYGPAAAKIPAPQIN  A                QMG   P  + S  +RG G+   G + Q++PSQQN  MRP Q+MPA   LHP QG+A P+ SRG N+ G                        S +N  +S++W + RPG  +T P G+ PS A
Sbjct:    2 DQFESFFRRADLDGDGRISGAEAVSFFQGSNLPKQVLAQVWAYADQAKTGFLGRAEFFNALRLVTVAQSKRDLTPDIVKAALYGPAAAKIPAPQINLAAVPQQRPNSMPGAGSVGQMGVTAPNLAQSFPYRGQGLAGPGANPQYYPSQQNPGMRPPQSMPAGGGLHPQQGVAGPDISRGVNMGGH-----------------------SFSNPGVSNDWNNVRPGMVATRPAGMIPSAA 217

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BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: A0A067HBB9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001211mg PE=4 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.194e-65
Identity = 138/266 (51.88%), Postives = 167/266 (62.78%), Query Frame = 2

Query:    2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPAT--TQMGAAVPPSSPSV-----------GFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQ------------------------PQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPST 685
            AG  QDQFE +F++ADLDGDGRISG EAV+FFQGS L KQVLAQIW +AD +H+ +L +QEF+NALKLVTVAQ +RELTPDIVKAALYGPAA KIP PQIN  AT   Q+ +    S P +           GFRGPG PN    QQ        S+RP Q  P     HP+QG   P+FSRGG+++GQ                        PQ+MPA ++P   QSMP    G ++ N N+SS+WLSG  GGASTG R ++PST
Sbjct:    2 AGPNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPDIVKAALYGPAATKIPPPQINLSATPAQQINSTAAVSVPQMSVPTQMAPQNFGFRGPGAPNVSQVQQQ-------SIRPYQAAP-----HPTQGSVGPDFSRGGSVMGQTQVMPGSTAPRPPQTMPAGTAPRPPQSMPASTSPHPPQSMPESTAGLNVPNSNISSDWLSGGAGGASTGSRAISPST 255

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BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: V4SLL7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000095mg PE=4 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 2.257e-64
Identity = 138/266 (51.88%), Postives = 167/266 (62.78%), Query Frame = 2

Query:    2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPAT--TQMGAAVPPSSP-----------SVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQ------------------------PQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPST 685
            AG  QDQFE +F++ADLDGDGRISG EAV+FFQGS L KQVLAQIW +AD +H+ +L +QEF+NALKLVTVAQ +RELTPDIVKAALYGPAA KIP PQIN  AT   Q+ +    S P           + GFRGPG PN    QQ        S+RP Q  P     HP+QG   P+FSRGG+++GQ                        PQ+MPA ++P   QSMP    G ++ N N+SS+WLSG  GGASTG R ++PST
Sbjct:    2 AGPNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPDIVKAALYGPAATKIPPPQINLSATPAQQINSTAAVSVPQMSVPTQMAPQNFGFRGPGAPNVSQVQQQ-------SIRPYQAAP-----HPTQGSVGPDFSRGGSVMGQTQVMPGSTAPRPPQTMPAGTAPRPPQSMPASTSPHPPQSMPESTAGLNVPNSNISSDWLSGGAGGASTGSRAISPST 255

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: A0A067HBM4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001211mg PE=4 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.520e-64
Identity = 138/266 (51.88%), Postives = 167/266 (62.78%), Query Frame = 2

Query:    2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPAT--TQMGAAVPPSSP-----------SVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQ------------------------PQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPST 685
            AG  QDQFE +F++ADLDGDGRISG EAV+FFQGS L KQVLAQIW +AD +H+ +L +QEF+NALKLVTVAQ +RELTPDIVKAALYGPAA KIP PQIN  AT   Q+ +    S P           + GFRGPG PN    QQ        S+RP Q  P     HP+QG   P+FSRGG+++GQ                        PQ+MPA ++P   QSMP    G ++ N N+SS+WLSG  GGASTG R ++PST
Sbjct:    2 AGPNQDQFESFFRRADLDGDGRISGAEAVAFFQGSNLPKQVLAQIWMHADHNHTSYLGRQEFYNALKLVTVAQSKRELTPDIVKAALYGPAATKIPPPQINLSATPAQQINSTAAVSVPQMSVPTQMAPQNFGFRGPGAPNVSQVQQQ-------SIRPYQAAP-----HPTQGSVGPDFSRGGSVMGQTQVMPGSTAPRPPQTMPAGTAPRPPQSMPASTSPHPPQSMPESTAGLNVPNSNISSDWLSGGAGGASTGSRAISPST 255

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Match: I1JST8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.571e-64
Identity = 128/244 (52.46%), Postives = 155/244 (63.52%), Query Frame = 2

Query:    2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ-RRELTPDIVKAALYGPAAAKIPAPQINFPA--------------TTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTGPRGVAPSTA 688
            AG   DQFE +F++ADLDGDGRISG EAVSFFQGS L KQVLAQ+WAYADQ+ +GFL + EFFNAL+LVTVAQ +R+LTPDIVKAALYGPAAAKIPAPQIN  A                QMG   P  + S  +RG G+   G + Q++PSQQ+  MRP Q+MPA   L P QG+A P+ SRG NI G             + S P V          +S++W + RPG  +T P G+ PS A
Sbjct:    2 AGPNMDQFEAFFRRADLDGDGRISGAEAVSFFQGSNLPKQVLAQVWAYADQAKTGFLGRAEFFNALRLVTVAQSKRDLTPDIVKAALYGPAAAKIPAPQINLAAVPQPRPNSMPGAGSVGQMGVTAPNLAQSFPYRGQGLAGPGANPQYYPSQQHPGMRPPQSMPAGGGLRPQQGVAGPDISRGVNIAGH------------NFSNPGV----------VSNDWNNVRPGMVATRPAGLTPSAA 223

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EHD2_ARATH (EH domain-containing protein 2 OS=Arabidopsis thaliana GN=EHD2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.875e-16
Identity = 62/219 (28.31%), Postives = 94/219 (42.92%), Query Frame = 2

Query:    8 QTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQR-RELTPDIVKAALYGPAAAKIPAPQINFPATTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATGPSLTNQNMSSNWLSGRPGGASTG 661
            + Q  ++ +F  AD DGDGR+SG +A  FF  S LS+Q L Q+WA AD    GFL   EF  A+KLV++AQ   E+T D++K +        I    +  P    +   V                  +S+ +   + N+  +PQ T  A T    S+ I  P+ +    + G  +       PL           P LT+ +  +  +    G  STG
Sbjct:   15 EHQKIYKEWFNIADSDGDGRVSGNDATKFFAMSKLSRQELKQVWAVADSKRQGFLGLSEFITAMKLVSLAQEGHEITSDLLKGS--------IDMKSVELPVLEGLENVVSKQK--------------VSKTNVDVEDNVVTKPQVT--AKTPWFKSKSIIKPQVNVVTIVDGLKRLYTEKLKPLEVTYRFNDFASPVLTSSDFDAKPMVMLLGQYSTG 209

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EHD1_ARATH (EH domain-containing protein 1 OS=Arabidopsis thaliana GN=EHD1 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.931e-11
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 2

Query:    8 QTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220
            + Q  ++ +F+ +D DGDGRI+G +A+ FF  S L +  L QIWA AD    G+L  +EF  A++LV++AQ
Sbjct:   14 ENQMIYKEWFEFSDSDGDGRITGNDAIKFFTMSNLPRPELKQIWAIADSKRQGYLGFKEFIVAMQLVSLAQ 84

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: YHLA_SCHPO (Uncharacterized calcium-binding protein C800.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC800.10c PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.101e-10
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 2

Query:    2 AGQTQDQFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQRR 226
            + + Q  F+  FK AD    G I+G EAV F + SGL+ QVL QIW  AD  + GFL+   F  A++LV +AQ +
Sbjct:    6 SAEEQTAFDQLFKIADKQDIGVITGEEAVPFLEKSGLAPQVLGQIWQIADAENRGFLTFSGFVIAMRLVALAQEK 80

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EPS15_HUMAN (Epidermal growth factor receptor substrate 15 OS=Homo sapiens GN=EPS15 PE=1 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 2.367e-10
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 2

Query:   23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220
            +E Y+++ D    GR+   +A +F + SGL   +L +IW  AD    G L+KQEFF AL+LV  AQ
Sbjct:   19 YEKYYRQVDTGNTGRVLASDAAAFLKKSGLPDLILGKIWDLADTDGKGILNKQEFFVALRLVACAQ 84

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EPS15_MOUSE (Epidermal growth factor receptor substrate 15 OS=Mus musculus GN=Eps15 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.565e-10
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 2

Query:   23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220
            +E Y+++ +    GR+  ++A +F + SGL   +L +IW  AD    G LSKQEFF AL+LV  AQ
Sbjct:   19 YEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQ 84

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EP15R_HUMAN (Epidermal growth factor receptor substrate 15-like 1 OS=Homo sapiens GN=EPS15L1 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.003e-9
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 2

Query:   23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220
            +E Y+K+ D    GR+   EA  F + SGLS  +L +IW  AD    GFL KQ F+ AL+LV  AQ
Sbjct:   19 YESYYKQVDPAYTGRVGASEAALFLKKSGLSDIILGKIWDLADPEGKGFLDKQGFYVALRLVACAQ 84

HSP 2 Score: 61.2326 bits (147), Expect = 1.633e-9
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 2

Query:   20 QFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQR--------RELTPDIV 247
            +F+  F K DLD DG +SG E    F  SGL++ +LA IWA AD   +G LSK +F  AL +  + Q+        + L+PD+V
Sbjct:  278 RFDEIFLKTDLDLDGYVSGQEVKEIFMHSGLTQNLLAHIWALADTRQTGKLSKDQF--ALAMYFIQQKVSKGIDPPQVLSPDMV 359

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EP15R_MOUSE (Epidermal growth factor receptor substrate 15-like 1 OS=Mus musculus GN=Eps15l1 PE=1 SV=3)

HSP 1 Score: 61.6178 bits (148), Expect = 1.229e-9
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 2

Query:   20 QFEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQR--------RELTPDIV 247
            +F+  F K DLD DG +SG E    F  SGL++ +LA IWA AD   +G LSK++F  AL +  + Q+        + L+PD+V
Sbjct:  276 RFDEIFLKTDLDLDGYVSGQEVKEIFMHSGLTQNLLAHIWALADTRQTGKLSKEQF--ALAMYFIQQKVSKGIDPPQVLSPDMV 357

HSP 2 Score: 61.2326 bits (147), Expect = 1.547e-9
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 2

Query:   23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220
            +E Y+K+ D    GR+   EA  F + SGLS  +L +IW  AD    GFL KQ F+ AL+LV  AQ
Sbjct:   19 YESYYKQVDPAYTGRVGASEAALFLKKSGLSDIILGKIWDLADPEGKGFLDKQGFYVALRLVACAQ 84

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: EPS15_DICDI (Epidermal growth factor receptor substrate 15 homolog OS=Dictyostelium discoideum GN=eps15 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 7.589e-9
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 2

Query:   23 FEVYFKKADLDGDGRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQ 220
            +E  F+ AD+D DG I G+   SFF+ S LS  +L  IW  +D  ++G+L+  +FF ALKLV++AQ
Sbjct:   15 YEELFQIADVDKDGVI-GLNDASFFRNSMLSNDILRDIWQLSD-VNNGYLNIDDFFVALKLVSLAQ 78

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Match: ITSN2_HUMAN (Intersectin-2 OS=Homo sapiens GN=ITSN2 PE=1 SV=3)

HSP 1 Score: 54.299 bits (129), Expect = 3.697e-7
Identity = 51/177 (28.81%), Postives = 78/177 (44.07%), Query Frame = 2

Query:   62 GRISGVEAVSFFQGSGLSKQVLAQIWAYADQSHSGFLSKQEFFNALKLVTVAQRRELTPDIVKAALYGPAAAKIPAPQINFPATTQMGAAVPPSSPSVGFRGPGVPNAGMSQQHFPSQQNLSMRPQQTMPAATALHPSQGIAAPEFSRGGNIVGQPQAMPAGSTPLSHQSMPTVATG 592
            G I+G +A +FF  SGL   VLA+IWA +D +  G + +QEF  A+KL+ +  + +  P ++   +  P     P     F   +    ++P   P      P  P   +S     S  NL   P   MP  T L PS  ++      G   + QP  +P  S+ L H S  ++  G
Sbjct:   38 GYITGDQARNFFLQSGLPAPVLAEIWALSDLNKDGKMDQQEFSIAMKLIKLKLQGQQLPVVLPPIMKQPPMFS-PLISARFGMGSMPNLSIPQPLP------PAAPITSLSSA--TSGTNL---PPLMMP--TPLVPS--VSTSSLPNGTASLIQPLPIPYSSSTLPHGSSYSLMMG 198

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
F6I6U0_VITVI	1.525e-69	55.14	Putative uncharacterized protein OS=Vitis vinifera...	[more]
M5WEZ4_PRUPE	2.341e-68	53.31	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
B9GPR9_POPTR	5.324e-67	57.63	Calcium-binding EF hand family protein OS=Populus ...	[more]
A0A0B2RPQ8_GLYSO	3.017e-66	53.28	Putative calcium-binding protein OS=Glycine soja G...	[more]
I1K7B7_SOYBN	3.118e-65	52.72	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2QIP4_GLYSO	3.317e-65	52.72	Putative calcium-binding protein OS=Glycine soja G...	[more]
A0A067HBB9_CITSI	5.194e-65	51.88	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4SLL7_9ROSI	2.257e-64	51.88	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067HBM4_CITSI	2.520e-64	51.88	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
I1JST8_SOYBN	2.571e-64	52.46	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0002948 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 9


Match Name	E-value	Identity	Description
EHD2_ARATH	3.875e-16	28.31	EH domain-containing protein 2 OS=Arabidopsis thal...	[more]
EHD1_ARATH	5.931e-11	43.66	EH domain-containing protein 1 OS=Arabidopsis thal...	[more]
YHLA_SCHPO	1.101e-10	44.00	Uncharacterized calcium-binding protein C800.10c O...	[more]
EPS15_HUMAN	2.367e-10	42.42	Epidermal growth factor receptor substrate 15 OS=H...	[more]
EPS15_MOUSE	3.565e-10	42.42	Epidermal growth factor receptor substrate 15 OS=M...	[more]
EP15R_HUMAN	1.003e-9	45.45	Epidermal growth factor receptor substrate 15-like...	[more]
EP15R_MOUSE	1.229e-9	40.48	Epidermal growth factor receptor substrate 15-like...	[more]
EPS15_DICDI	7.589e-9	45.45	Epidermal growth factor receptor substrate 15 homo...	[more]
ITSN2_HUMAN	3.697e-7	28.81	Intersectin-2 OS=Homo sapiens GN=ITSN2 PE=1 SV=3	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011992	EF-hand domain pair	GENE3D	1.10.238.10		coord: 2..54 e-value: 1.0E-15 score: 56.7
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 2..43
None	No IPR available	PANTHER	PTHR11216:SF72	CALCIUM-BINDING EF HAND-CONTAINING PROTEIN	coord: 4..161
None	No IPR available	PANTHER	PTHR11216	EH DOMAIN	coord: 4..161
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 14..26
IPR000261	EH domain	PROSITE	PS50031	EH	coord: 1..57 score: 10.429
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 1..36 score: 10.134

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0002948 ID=g.arboreum_cottongen_reftransV1_0002948; Name=g.arboreum_cottongen_reftransV1_0002948; organism=Gossypium arboreum; type=contig; length=713bp
GGCGGGGCAAACTCAGGATCAATTCGAAGTTTACTTCAAGAAAGCAGATT
TAGATGGGGATGGCAGAATTAGTGGAGTTGAGGCTGTTTCTTTCTTTCAA
GGATCCGGTTTGTCCAAACAAGTCCTCGCTCAGATATGGGCATATGCTGA
CCAAAGTCATAGTGGTTTCCTGAGCAAGCAAGAGTTTTTTAATGCTCTCA
AGCTTGTGACCGTAGCACAAAGGCGTGAATTAACACCAGACATTGTCAAG
GCAGCATTATATGGCCCTGCTGCAGCAAAAATTCCAGCTCCGCAAATTAA
TTTTCCTGCCACAACACAGATGGGTGCAGCTGTGCCACCATCCTCTCCAA
GTGTTGGGTTCAGAGGACCAGGAGTTCCAAATGCTGGTATGAGCCAGCAA
CATTTTCCATCTCAACAGAACCTCTCAATGAGACCCCAACAAACAATGCC
TGCTGCTACTGCCCTGCACCCTTCTCAAGGTATTGCAGCTCCAGAGTTTT
CTAGGGGAGGTAATATAGTTGGTCAACCTCAAGCTATGCCTGCTGGTTCT
ACTCCACTTTCACATCAATCCATGCCCACCGTTGCTACTGGTCCCAGTTT
AACAAATCAAAATATGTCTAGCAATTGGCTTTCTGGAAGGCCTGGTGGAG
CTTCAACTGGGCCACGAGGGGTCGCTCCATCAACAGCACCAAGGCCACAA
GCTGCAGTTTCAA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS
IPR000261	EH_dom
IPR002048	EF_hand_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0005509	calcium ion binding

Search form

g.arboreum_cottongen_reftransV1_0002948, g.arboreum_cottongen_reftransV1_0002948 (contig) Gossypium arboreum

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