g.arboreum_cottongen_reftransV1_0021360, g.arboreum_cottongen_reftransV1_0021360 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021360 vs. ExPASy TrEMBL
Match: B9RJL2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1035820 PE=4 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 6.271e-41 Identity = 189/692 (27.31%), Postives = 307/692 (44.36%), Query Frame = -3 Query: 652 VNSMEEKKREMALNTSFLAPNAKGNMFSDENTEDGHFPSFLKGMEVDLKDKATRD----DPKAGCADTSTELSNVRIDNVQGNYSEGCSLIASGNKQR---VNLVDHLKGASVTIDSTHERGSGCGLSSSKGDQTCVISNSL---------------------------------ILVSGTLD--DPESIMVNESA--NIEPTICFQSH-------LPMKKPSQEK-SETVLLTSHGREQIFPSDNNAFKAFSRTVEVSDLDGAQNYRGLSPGVNSRNSGVDPNILASVKHEKTKDR-LFGPSSYKKTHTCTPEY--------KQDKGSESILXXXXXXXXXXXYETSMNKVSFFSKEEPKHKGGSS-------IVGNAYARVGTFALTGTVQESCSPHFSGNREKISGKNNVPGISSGAVLEPKQNKGAFEDFFGLSSSEQTH-VANNLNMVHAGTAHDGSRLQDFQNARNNEIMIGYTNHARPIEDSMTGLTWKSNEGNVLLSGLADTSSQLLTSSGYYPTFDWMSHKGETEMFDISGKCSSISGFEGLQSGSIEH--MEYNFLTAQPSSCSGNPKGQSEMFNISGKCSNESGLSDNLEHMEYSFMTAQPSSRSGNSKVPSYGSEMALKFD-SVWLGKDALPLLPKIAGRHQVTTLCSWCGNQFYNEAVDIAAQRSTM-VMCANCRARFS 2508 ++S++E +E L+ LA N++G F EN +D S + GM++D D A +D D C +N++ + SEG S + GN QR VN +D L S T + TH RGS SS +TC +N + + + GT+ +PES + S + CF + KK QEK SE LT EQ +NN K F+ T +++ + Q+ + S+++ + + +++ E++ + L PS E+ Q + SES ++Q ++Q N E +M +SF + ++ K+K S + + + + T+++ SGN++K + ++N GI + +Q + + E F LSSSEQ V NN +MV G RL++ R NE IG++ ++ E++ + W+++E N LLS ADTSSQL+ SSG +PT+ M ++ ++ + GFEGL+SG+ H MEYNF+T S S SK+ YG ++A + SVWL K+A+PLLPK+ + + T C WC N+F EA++ AQ ++ + CA C+A+FS Sbjct: 704 MSSIDEHNQERDLDGGLLALNSEGRAFGGENIKDRPLFSTITGMKLDETDFAGKDKLSTDFGEYCPSQGDPAANIK----EQRSSEGYSFVLCGNGQRYCSVNNLDEL-STSNTAELTHARGSKGPSPSSLDAKTCPWNNKVNQVSTSTVTRSRCGELGKSRTNVQTVNFGNNKTLTIGGTVTSCEPESSLGRCSVIPSWNEQTCFAENDKNATRRCTRKKNWQEKGSEGSQLTLFSGEQSLGFENNIMKVFNYTSGLTNHEEVQDSKNSDC---SKDADLVVGHVTNIELERSANSFLLDPSGNHLMFAAKDEFLNGSSKNLAQGRISESSSHRQSCDEQKGNNENNM--ISFITMDQHKNKEVKSREGEPHLVFHHRHVEHDADIVKNTMEKDSFLSISGNKQKFAAEDNRSGIYRST--QDEQRRASIESLFCLSSSEQVLGVENNSDMVLTGKVQQKPRLEELY-PRKNESAIGFSTDSQASENAASEFMWRTDEENDLLSSFADTSSQLVQSSGCFPTYGAM-----VKVSSLATSLVAYPGFEGLKSGNXXHENMEYNFMT----------------------------------------------SHSDESKIFPYGVDIAQGLEPSVWLEKEAMPLLPKMTSKRHIRTFCVWCRNEFQYEALESEAQIGSLGLTCAACKAKFS 1331
BLAST of g.arboreum_cottongen_reftransV1_0021360 vs. ExPASy TrEMBL
Match: M5XS88_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016410mg PE=4 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 4.559e-39 Identity = 102/277 (36.82%), Postives = 145/277 (52.35%), Query Frame = -3 Query: 634 AVLEPKQNKGAFEDFFGLSSSEQTH-VANNLNMVHAGTAHDGSRLQDFQNARNNEIMIGYTNHARPIEDSMTGLTWKSNEGNVLLSGLADTSSQLLTSSGYYPTFDWMSHKGETEMFDISGKCSSISGFEGLQSGSIEHMEYNFLTAQPSSCSGNPKGQSEMFNISGKCSNESGLSDNLEHMEYSFMTAQPSSRSGNSKVPSYGSEMALKF-DSVWLGKDALPLLPKIAGRHQVTTLCSWCGNQFYNEAVDIAAQRSTM-VMCANCRARFSRNHDFM 1455 +VLE K G+ + SEQT N+LN V++ + ++ +++RNN+ M G+ NH++P D M L W+ +E NV SGLADTSS+L+ SSG +P FD +S KG ++ K +ISG EGL+ G IE +EYNF TA Q SS S SKV SY EM F S WL K++LP +P IA R + T +C WCGN+FY+E + AQ ++ +MCA C+A+FS +++ Sbjct: 823 SVLEDKLITGSVNGLICPNGSEQTPGFENSLNRVYSSITWEQPNTENAESSRNNDPMTGFLNHSQPSGDVMAELMWRIDEQNVQQSGLADTSSELVQSSGCHPNFDMLSGKGADGALSVNEKFDNISGLEGLKPGRIEKLEYNFQTA------------------------------------------QASSHSKESKVLSYDGEMEQGFSSSAWLEKESLPSMPNIANRPE-TNICVWCGNEFYHEVYEAGAQTGSVGLMCAACQAKFSSQFNYL 1056
BLAST of g.arboreum_cottongen_reftransV1_0021360 vs. ExPASy TrEMBL
Match: B9GUW9_POPTR (DNA-binding family protein OS=Populus trichocarpa GN=POPTR_0002s09790g PE=4 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.258e-36 Identity = 143/489 (29.24%), Postives = 223/489 (45.60%), Query Frame = -3 Query: 652 IEPTICFQSHLPMKKPSQEK-SETVLLTSHGREQIFPSDNNAFKAFSRTVEVSDLDGAQNYRGLSPGVNSRNSGVDPNILASVKHEKTKDRL--------FGPSSYKKTHTCTPEYKQDKGSESILXXXXXXXXXXXYETSMNKVSFFSKEEPK------------HKGGSSIVGNAYARVGTFALTGTVQESCSPHFSGNREKISGKNNVPGISSGAVLEPKQNKGAFEDFFGLSSSEQT-HVANNLNMVHAGTAHDGSRLQDFQNARNNEIMIGYTNHARPIE-DSMTGLTWKSNEGNVLLSGLADTSSQLLTSSGYYPTFDWMSHKGETEMFDISGKCSSISGFEGLQSGSIEHMEYNFLTAQPSSCSGNPKGQSEMFNISGKCSNESGLSDNLEHMEYSFMTAQPSSRSGNSKVPSYGSEMALKF-DSVWLGKDALPLLPKIAGRHQVTTLCSWCGNQFYNEAVDIAAQRSTM-VMCANCRARFS 2043 +E TI +++P Q K SE +T+ G EQ+F ++N K + T++V++ D + L P L S+K E+ L F Y +++ + +Q + S N+Q+ + + +N +SF + EE H A VGT GTVQ+ CS F+G++ + K+N G SGAV E KQ + E S SE V NL G+ + R+++ +N R ++ IG+++H P E D ++ W+++E + LLS ADTS Q + +S ++P +D +S KGE+E+F + K + SGFEGL+ G +++ME N T +Q SS S SKV +Y + M S+WL K+ LP +PK + RH V +C WCG + EA++ Q STM MCA C A+ S Sbjct: 847 VENTITGAPKCILREPCQGKESEDCPITTSGNEQLFDFESNVIKVSNGTIDVANHDQVGSEIDLVP-----------QTLTSIKQEEISKTLTFAPFTNGFASKDYGISNSVLEKLEQGRNSGR---GSSDNEQSHDVKDIVNGLSFTTVEEDNQQEVKISCNGELHIASDDNCTEQDADVGT----GTVQK-CS-LFAGSQLAFTAKDNPTGPYSGAVDELKQKMDSVESAVCPSGSEPVWSVEKNLQTAFTGSVQEEPRVENSENPRKDDSGIGFSSHPGPDESDVISEFMWRNDEESNLLSDFADTSCQPVQTSSFFPPYDAVSDKGESELF--AEKFGATSGFEGLKLGGMDNMECNLPT------------------------------------------SQVSSHSDESKVGTYDAVMPKGITSSIWLAKEDLPFVPKDSSRHHVPAVCVWCGREICQEALESEGQTSTMGFMCAECTAKLS 1271
BLAST of g.arboreum_cottongen_reftransV1_0021360 vs. ExPASy TrEMBL
Match: F6H0Q3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05740 PE=4 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 2.153e-26 Identity = 98/291 (33.68%), Postives = 147/291 (50.52%), Query Frame = -3 Query: 655 FSGNREKISGKNNVPGISSGAVLEPKQNKGAFEDFFGLSSSEQ-THVANNLNMVHAGTAHDGSRLQDFQNARNNEIMIGY-TNHARPIEDSMTGLTWKSNEGNVLLSGLADTSSQLLTSSGYYPTFDWMSHKGETEMFDISGKCSSISGFEGLQSGSIEHMEYNFLTAQPSSCSGNPKGQSEMFNISGKCSNESGLSDNLEHMEYSFMTAQPSSRSGNSKVPSYGSEMALKFDSV-WLGKDALPLLPKIAGRHQVTTLCSWCGNQFYNEAVDIAAQR-STMVMCANCRARF 1515 S N +KI ++ V G + AV E K + F S EQ + N+L V+ G + RL++ +N N E+MIG+ ++HA+P +D M + W+S+E NVL S L ++SS ++ SS +PTFD +S KG ++G C++ F + SIE+++++ LTAQ +S S +SKV SY + M F+S WL K+ LLPK+AGRH V LC WC N+F++E V A Q ST +MC C+ +F Sbjct: 924 LSKNEQKIGAESPVTGFCNSAVAELKLGGHSESGFCIQSDGEQKCGIGNDLKRVYPGRFWEVPRLREVENPSNTELMIGFGSSHAQPGQDVMAEVMWRSDEENVLQSALGNSSSSMVLSSSCFPTFDVISDKG------LNGLCTANEKF---NTDSIENLKFSSLTAQRNSL------------------------------------------SEDSKVLSYDAGMEQGFNSSEWLEKET--LLPKVAGRHLVAALCIWCRNEFHHENVGNATQTGSTGLMCPTCKVKF 1161
BLAST of g.arboreum_cottongen_reftransV1_0021360 vs. ExPASy TrEMBL
Match: A0A068TXS5_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_6 OS=Coffea canephora GN=GSCOC_T00034565001 PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 3.314e-23 Identity = 80/267 (29.96%), Postives = 130/267 (48.69%), Query Frame = -3 Query: 634 DFFGLSSSEQT-HVANNLNMVHAGTAHDGSRLQDFQNARNNEIMIGYTN-HARPIEDSMTGLTWKSNEGNVLLSGLADTSSQL-LTSSGYYPTFDWMSHKGETEMFDISGKCSSISGFEGLQSGSIEHMEYNFLTAQPSSCSGNPKGQSEMFNISGKCSNESGLSDNLEHMEYSFMTAQPSSRSGNSKVPSYGSEMALKFD-SVWLGKDALPLLPKIAGRHQVTTLCSWCGNQFYNEAVDIAAQRSTMV--MCANCRARFSRNHDFM 1416 D G + +QT N NM++ G +G ++ D +N+ N+ +IG+ + +P+ED M+G W++ EGN L +GLA+TS+ L +SS + FD +S KG+ +F ++ +GFEGL+ G +EY+F+TAQ S +S G +K SY ++D S WLGKDA L+P + G++ V T C WC N+FY E + + + MC C ++ S+ + + Sbjct: 982 DLHGPAFGDQTCDFDNRFNMIYQGKVWEGPKIDDVENS-GNKFIIGFDGGNTQPVEDVMSGSIWRTGEGNFLQTGLANTSTPLEESSSNSFRNFDIISQKGD-RLFGVNQNYEGGTGFEGLRLGRSNPVEYSFMTAQSS-----------------------------------------NSIPGENKGFSYDVNTGQQYDSSFWLGKDA--LMPNVTGQNPVPTFCVWCRNEFYQEEPMPSGAEAGAIGSMCPACSSKISQRFNVL 1203
BLAST of g.arboreum_cottongen_reftransV1_0021360 vs. ExPASy TrEMBL
Match: W9QJA1_9ROSA (5'-adenylylsulfate reductase-like 4 OS=Morus notabilis GN=L484_003090 PE=4 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 5.300e-19 Identity = 83/285 (29.12%), Postives = 123/285 (43.16%), Query Frame = -3 Query: 712 GTFALTGTVQESCSPHFSGNREKISGKNNVPGISSGAVLEPKQNKGAFEDFFGLSSSEQTHVANNLNMVHAGTAHDGSRLQDFQNARNNEIMIGYTNHARPIEDSMTGLTWKSNEGNVLLSGLADTSSQLLTSSGYYPTFDWMSHKGETEMFDISGKCSSISGFEGLQSGSIEHMEYNFLTAQPSSCSGNPKGQSEMFNISGKCSNESGLSDNLEHMEYSFMTAQPSSRSGNSKVPSYGSEMALKFD-SVWLGKDALPLLPKIAGRHQVTTLCSWCGNQFYNEAV 1563 G + G+ E SP S + + NN+ GI V E K + + GL HV +++ + + +D RNNE+M G N+++ D L W ++E N S L DTSS + SG + F+ MS K +++ + ISGFEGL GS + +Y+FLTAQ + N SNES L H +E+ FD S WL ++L L PK+A +Q T+C WC +FY++ V Sbjct: 1036 GKTTIKGSSSEGSSPVISRSGQTFPNTNNLSGIYRRKVEELKLKRCSD---IGL-----IHVPDDMKRASTNALWEQPKQEDTNKTRNNELMTGSVNNSQTYGDFTPELIWGTDEQNFQPSRLVDTSSAPMQLSGCFANFNIMSEKDAYGDLNVNERFEGISGFEGLGLGSTKQSQYDFLTAQGT------------LN-----SNESKC---LSH-----------------------AEIKQGFDPSFWLTNESLTLFPKVAAENQTVTICIWCRKEFYHQGV 1269
BLAST of g.arboreum_cottongen_reftransV1_0021360 vs. ExPASy TrEMBL
Match: M1A7M7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006417 PE=4 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 5.236e-13 Identity = 86/346 (24.86%), Postives = 139/346 (40.17%), Query Frame = -3 Query: 634 SMNKVSFFSKEEPKHKGGSSIVGNAYARVGTFALTGTVQESCSPHFSGNREKISGKNNVPGISSGAVLEPKQNKGAFEDFFGLSSSEQT-HVANNLNMVHAGTAHDGSRLQDFQNARNNEIMIGYTNHARPIEDSMTGLTWKSNEGNVLLSGLADTSSQLLTSSGYYPTFDWMSHK-----GETEMFDISGKCSSISGFEGLQSGSIEHMEYNFLTAQPSSCSGNPKGQSEMFNISGKCSNESGLSDNLEHMEYSFMTAQPSSRSGNSKVPSYGSEMALKFD-SVWLGKDALPLLPKIAGRHQVTTLCSWCGNQFYNEAVDIAAQRSTMVMCANCRARFSRNHDFM 1650 S+ + F E P+H + + N++ +G V +C+ G E ++N+ LE ++ D S E+ +N N V + +L + N+ I A+P ED M G W++ NV+ G AD S+ + SS + T+D +S K GE E +D + +GF+GL S +EY+F++ Q S+ + +P +V Y ++ F+ S WLGKD L+P +AG +QVT +C WC N FY ++ + A S MC C + FM Sbjct: 910 SLKESKFDCLENPRHHDLNVVFDNSHVDLG-------VNLNCTTFQLGMEETYGVQDNLQ-----KRLETDKHGEVGIDLRDSSFKEKAGDFGSNFNTVFHSQLWNEHKLDEVDNSGKKIITSFGCGDAKPNEDVMAGSIWRAGVENVMQGGSADNSTSVAQSSNCFQTYDVLSDKVPNLFGENEKYDGN------TGFDGLSSDRSGPVEYSFMSTQSSNS----------------------------------LQEEP-------RVLPYDVDIEQGFNSSFWLGKDN--LMPNLAGSNQVTMVCVWCRNLFYQDSNQLEAG-SIGAMCPTCSGSTAGQFSFM 1193 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021360 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 17
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BLAST of g.arboreum_cottongen_reftransV1_0021360 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0021360 ID=g.arboreum_cottongen_reftransV1_0021360; Name=g.arboreum_cottongen_reftransV1_0021360; organism=Gossypium arboreum; type=contig; length=2780bpback to top |