g.arboreum_cottongen_reftransV1_0005499, g.arboreum_cottongen_reftransV1_0005499 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005499
Unique Nameg.arboreum_cottongen_reftransV1_0005499
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1850
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0005499:1..1850 .
Chr5:52137385..52142598 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005499 vs. ExPASy TrEMBL
Match: V4KTH4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10006981mg PE=4 SV=1)

HSP 1 Score: 616.69 bits (1589), Expect = 0.000e+0
Identity = 318/456 (69.74%), Postives = 368/456 (80.70%), Query Frame = 3
Query:  111 DFGHDKDYILDEAKSHDKNVNESSTSFNAKTNNE--HAVKEVKEESSLSREASQDFDDVDADSHHAGSLS-----HKSGK-NLXXXXXXXXXXXXFSGSCEMKLMNSTH-LVEPVESRKFARFSLQYKQMEEKPEGEDQWVPRFAGHQNLQEREESFFARDQKINCGFVKGPQGYPSTGFDLAEDDVNYISRCHIAVISCIFGNSDRLRTPAGKMVTRSSRKNVCFVMFVDEATMQTLYSEGQTPD-GGFIGLWKIVVVKNLPYTDMRRVGKIPKLLPHRLFPFARYSIWLDSKXXXXXXXXXXXXYFLWRKGHEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQFDFYQADGLKRFDASDPNKLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRRTNPDKPFYLNMFKDCERRAVAKLFRHRSDEKRYIQQRA 1448
            D   D+D  +D   SHD   +E   S + +  NE  H  K+ +   S++++ + + DDV A     G +S      KSGK +   + ++   RR    SCEMKLMNS+H +VEP+ +RK ARFSLQY + E+KP+GE+QW PRFAGHQ+LQERE+SF  +D+KI+CGFVK  +G PSTGFDL EDD NYISRCHIAVISCIFGNSDRLR PA KM++R SRKNVCF++FVDE TMQTL +EG  PD  GFIGLWK+VVVKNLPY DMRRVGKIPKLLPHRLFP ARYSIWLDSKLRLQ DPL +L+YFLWRKGHEYAISNHYDRHC+WEEVAQNKKLNKYNHTVID+QF+FY+ADGL RF+ASDP KLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRR NP+KPF L+MFKDCERR +AKLFRHRS+EKR + Q A
Sbjct:  223 DMDPDEDDAID---SHDSQGDEYVDSGHDEDENEEPHKEKDTEVLPSMTKQQNSEKDDVAASKRSLGDISVVSKGGKSGKTSRSDTKRRGRGRRSSGASCEMKLMNSSHQIVEPLNTRKSARFSLQYIETEDKPDGEEQWEPRFAGHQSLQEREDSFLVQDKKIHCGFVKALKGSPSTGFDLTEDDTNYISRCHIAVISCIFGNSDRLRPPANKMISRLSRKNVCFIVFVDEITMQTLSAEGHAPDRAGFIGLWKLVVVKNLPYADMRRVGKIPKLLPHRLFPSARYSIWLDSKLRLQLDPLLILEYFLWRKGHEYAISNHYDRHCLWEEVAQNKKLNKYNHTVIDQQFEFYKADGLTRFNASDPFKLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRRMNPEKPFNLHMFKDCERRKIAKLFRHRSEEKRNLIQAA 675          
BLAST of g.arboreum_cottongen_reftransV1_0005499 vs. ExPASy TrEMBL
Match: A0A078I6E7_BRANA (BnaA08g06380D protein (Fragment) OS=Brassica napus GN=BnaA08g06380D PE=4 SV=1)

HSP 1 Score: 613.994 bits (1582), Expect = 0.000e+0
Identity = 291/358 (81.28%), Postives = 324/358 (90.50%), Query Frame = 3
Query:  381 SCEMKLMNSTH-LVEPVESRKFARFSLQYKQMEEKPEGEDQWVPRFAGHQNLQEREESFFARDQKINCGFVKGPQGYPSTGFDLAEDDVNYISRCHIAVISCIFGNSDRLRTPAGKMVTRSSRKNVCFVMFVDEATMQTLYSEGQTPD-GGFIGLWKIVVVKNLPYTDMRRVGKIPKLLPHRLFPFARYSIWLDSKXXXXXXXXXXXXYFLWRKGHEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQFDFYQADGLKRFDASDPNKLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRRTNPDKPFYLNMFKDCERRAVAKLFRHRSDEKRYIQQRA 1448
            +CEMKL+NS+  +VEP+ +RK ARFSLQY + EEKP+GE+QW PRFAGHQ+LQER++SF A D+KI+CGFVK P+G P+TGFDL EDD NYISRCHIAVISCIFGNSDRLR PA KM++R SRKNVCF++FVDE TMQTL +EG  PD  GFIGLWK+VVVKNLPY DMRRVGKIPKLLPHRLFP ARYSIWLDSKLRLQ DPL +L+YFLWRKGHEYAISNHYDRHC+WEEVAQNKKLNKYNHTVID+QF+FY+ADGL RF+ASDP KLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRR NPDKPF L+MFKDCERR +AKLFRHRS+EKR + Q A
Sbjct:  492 ACEMKLLNSSQPIVEPLNTRKSARFSLQYVENEEKPDGEEQWDPRFAGHQSLQERQDSFLAEDKKIHCGFVKAPKGSPTTGFDLTEDDTNYISRCHIAVISCIFGNSDRLRPPANKMISRLSRKNVCFIVFVDEITMQTLSAEGNAPDRAGFIGLWKLVVVKNLPYADMRRVGKIPKLLPHRLFPSARYSIWLDSKLRLQLDPLLILEYFLWRKGHEYAISNHYDRHCLWEEVAQNKKLNKYNHTVIDQQFEFYKADGLTRFNASDPFKLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRRMNPDKPFNLHMFKDCERRKIAKLFRHRSEEKRNLIQAA 849          
BLAST of g.arboreum_cottongen_reftransV1_0005499 vs. ExPASy TrEMBL
Match: Q9SST1_ARATH (Putative uncharacterized protein AT4g09630 OS=Arabidopsis thaliana GN=At4g09630 PE=2 SV=1)

HSP 1 Score: 611.298 bits (1575), Expect = 0.000e+0
Identity = 313/469 (66.74%), Postives = 374/469 (79.74%), Query Frame = 3
Query:   90 SRKEDYDDFGHDKDYILDEAK---SHDKNVNESSTSFNAKTNNEHAVKEVKEESSLSREASQDFDDVDADSHHAGS---------LSHKSGKNLXXXXXXXXXXXXFSG-SCEMKLMNSTHLV-EPVESRKFARFSLQYKQMEEKPEGEDQWVPRFAGHQNLQEREESFFARDQKINCGFVKGPQGYPSTGFDLAEDDVNYISRCHIAVISCIFGNSDRLRTPAGKMVTRSSRKNVCFVMFVDEATMQTLYSEGQTPDG-GFIGLWKIVVVKNLPYTDMRRVGKIPKLLPHRLFPFARYSIWLDSKXXXXXXXXXXXXYFLWRKGHEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQFDFYQADGLKRFDASDPNKLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRRTNPDKPFYLNMFKDCERRAVAKLFRHRSDEKRYIQQRAT 1451
            ++ ++Y D GHD D   +  K    H+++  E S   + + N + A +  KE +S+   ++     ++   H A S         LS KSGK  ++  K++ R  +FSG SCEMKL+NS+  + EP++++ FA  SLQY QME+KP+GE+QW P+FAGHQ+LQERE+SF  ++QKI+CGFVK P+G PSTGFDL EDD NYIS+CHIAVISCIFGNSDRLR PA KMV+  SRK+VCFV+FVDE TMQTL +EGQ PDG GF+GLWK+VVV+NLPYTDMRRVGKIPKLLPHRLF  ARYSIWLDSKLRLQ DPL +L+YFLWR+GHEYAISNHYDRHC+WEEVAQNKKLNKYNHTVID+QF+FYQ+DGL RF+ASDP+KLLPSNVPEGSFIVR HTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKL R NPD PF L+MFKDCERR + KLFRHRS+EKR + Q AT
Sbjct:  242 TQGDEYVDMGHDGDENEESHKDNHKHNEDGAEESHKDSHRHNEDGAEESHKETASVFLHSTTKHQKIEK-VHGATSKRSRGKSSLLSGKSGKTSQTDAKRRARSHRFSGVSCEMKLLNSSQQIQEPLKTQNFAAPSLQYIQMEDKPDGEEQWEPKFAGHQSLQEREDSFLVQEQKIHCGFVKAPEGLPSTGFDLTEDDANYISKCHIAVISCIFGNSDRLRHPANKMVSSLSRKDVCFVVFVDEITMQTLSAEGQVPDGAGFVGLWKLVVVRNLPYTDMRRVGKIPKLLPHRLFTSARYSIWLDSKLRLQLDPLVILEYFLWREGHEYAISNHYDRHCLWEEVAQNKKLNKYNHTVIDQQFEFYQSDGLTRFNASDPHKLLPSNVPEGSFIVREHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLTRMNPDTPFNLHMFKDCERRKITKLFRHRSEEKRNLIQAAT 709          
BLAST of g.arboreum_cottongen_reftransV1_0005499 vs. ExPASy TrEMBL
Match: D7LXB6_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_911228 PE=4 SV=1)

HSP 1 Score: 610.142 bits (1572), Expect = 0.000e+0
Identity = 307/457 (67.18%), Postives = 364/457 (79.65%), Query Frame = 3
Query:   90 SRKEDYDDFGHDKDYILDEAKSHDKNVNESSTSFNAKTNNEHAVKEVKEESSLSREASQDFDDVDADSHHAGSLSHKSGKNLXXXXXXXXXXXXFSG-SCEMKLMNSTHLV-EPVESRKFARFSLQYKQMEEKPEGEDQWVPRFAGHQNLQEREESFFARDQKINCGFVKGPQGYPSTGFDLAEDDVNYISRCHIAVISCIFGNSDRLRTPAGKMVTRSSRKNVCFVMFVDEATMQTLYSEGQTPDG-GFIGLWKIVVVKNLPYTDMRRVGKIPKLLPHRLFPFARYSIWLDSKXXXXXXXXXXXXYFLWRKGHEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQFDFYQADGLKRFDASDPNKLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLRRTNPDKPFYLNMFKDCERRAVAKLFRHRSDEKRYIQQRAT 1451
            ++ ++Y D GHD D   +  K + ++  + +T  + K N    +    +   + +            S   G+   KSGK  ++  K++ R  +FSG SCEMKL+NS+  + EP++++ FA  SLQY +ME+KP+GE+QW P+FAGHQ+LQERE+SF  ++QKI+CGFVK P+G PSTGFDL EDD NYISRCHIAVISCIFGNSDRLR PA KMV+  SRK+VCFV+FVDE TMQTL +EGQ PDG GF+GLWK+VVV+NLPY DMRRVGKIPKLLPHRLFP ARYSIWLDSKLRLQ DPL +L+YFLWR+GHEYAISNHYDRHC+WEEVAQNKKLNKYNHTVID+QF+FYQADGL RF+ASDPNKLLPSNVPEGSFIVR HTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKL R NPD PF L+MFKDCERR + KLFRHRS+EKR + Q AT
Sbjct:  242 TQGDEYVDMGHDGDENEESHKDNHRHNEDGATEESHKENASVFLHSTTKHQKIEKIHGATSKRSRGKSSLVGA-GGKSGKTAQTDTKRRARSHRFSGVSCEMKLLNSSQQIKEPLKTQNFAAPSLQYIEMEDKPDGEEQWEPKFAGHQSLQEREDSFLVQEQKIHCGFVKSPEGLPSTGFDLTEDDANYISRCHIAVISCIFGNSDRLRHPANKMVSSLSRKDVCFVVFVDEITMQTLSAEGQVPDGAGFVGLWKLVVVRNLPYADMRRVGKIPKLLPHRLFPSARYSIWLDSKLRLQLDPLVILEYFLWREGHEYAISNHYDRHCLWEEVAQNKKLNKYNHTVIDQQFEFYQADGLTRFNASDPNKLLPSNVPEGSFIVREHTPMSNLFSCLWFNEVERFTPRDQLSFAYTYQKLTRMNPDTPFNLHMFKDCERRKITKLFRHRSEEKRNLIQAAT 697          
BLAST of g.arboreum_cottongen_reftransV1_0005499 vs. ExPASy TrEMBL
Match: A0A061FIR6_THECC (Uncharacterized protein isoform 5 OS=Theobroma cacao GN=TCM_036343 PE=4 SV=1)

HSP 1 Score: 609.757 bits (1571), Expect = 0.000e+0
Identity = 319/390 (81.79%), Postives = 343/390 (87.95%), Query Frame = 3
Query:   90 SRKEDYDDFGHDKDYILDEAKSHDKNVNESSTSFNAKTNNEHAVKEVKEESSLSREASQDFDDVDADSHHAGSLSHKSGKNLXXXXXXXXXXXXFSGSCEMKLMNSTHLVEPVESRKFARFSLQYKQMEEKPEGEDQWVPRFAGHQNLQEREESFFARDQKINCGFVKGPQGYPSTGFDLAEDDVNYISRCHIAVISCIFGNSDRLRTPAGKMVTRSSRKNVCFVMFVDEATMQTLYSEGQTPDGGFIGLWKIVVVKNLPYTDMRRVGKIPKLLPHRLFPFARYSIWLDSKXXXXXXXXXXXXYFLWRKGHEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQFDFYQADGLKRFDASDPNKLLPSNVPEGSFIVRAHTPMSNLFSCL 1259
            S+ EDYDDFGHDK+  +DEAKSHD++V E ST   +KT   H VKE KEES LSREAS DF DVDA+S H GSL  K  K+ R+  K+KPRRRKFSGSCEMKL+NSTHLVEP+ESRKFARFSLQYKQMEE  EGE+QWVP FAGHQ+LQEREESF A DQKINCGFVKGPQGYPSTGFDLAEDDVNYISRCHIAVISCIFGNSDRLRTPAGKMVTR SRKNVCFVMFVDE TMQTL+SEGQ+PDGGFIGLWKIVVVKNLPY DMRRVGKIPKLLPHRLFP ARYSIWLDSKLRLQRDPLQLLDYFLWRKGHEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQF+FYQADGLK+F++SDPNKLLPS+     F+   H   S++  CL
Sbjct:  252 SQTEDYDDFGHDKEDNVDEAKSHDEHVKEFSTF--SKTKERHVVKEGKEESMLSREASGDFGDVDANSQHVGSLGRKGAKSSRADSKRKPRRRKFSGSCEMKLLNSTHLVEPLESRKFARFSLQYKQMEENSEGEEQWVPTFAGHQSLQEREESFLAHDQKINCGFVKGPQGYPSTGFDLAEDDVNYISRCHIAVISCIFGNSDRLRTPAGKMVTRLSRKNVCFVMFVDEVTMQTLFSEGQSPDGGFIGLWKIVVVKNLPYADMRRVGKIPKLLPHRLFPSARYSIWLDSKLRLQRDPLQLLDYFLWRKGHEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDEQFEFYQADGLKKFNSSDPNKLLPSS----KFVKDTH---SSILRCL 632          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005499 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V4KTH4_EUTSA0.000e+069.74Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
A0A078I6E7_BRANA0.000e+081.28BnaA08g06380D protein (Fragment) OS=Brassica napus... [more]
Q9SST1_ARATH0.000e+066.74Putative uncharacterized protein AT4g09630 OS=Arab... [more]
D7LXB6_ARALL0.000e+067.18Putative uncharacterized protein OS=Arabidopsis ly... [more]
A0A061FIR6_THECC0.000e+081.79Uncharacterized protein isoform 5 OS=Theobroma cac... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0005499 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006852Protein of unknown function DUF616PFAMPF04765DUF616coord: 23..341
e-value: 1.2E-144
score: 481.2
NoneNo IPR availablePANTHERPTHR12956:SF24SUBFAMILY NOT NAMEDcoord: 1..354
NoneNo IPR availablePANTHERPTHR12956ALKALINE CERAMIDASE-RELATEDcoord: 1..354

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005499 ID=g.arboreum_cottongen_reftransV1_0005499; Name=g.arboreum_cottongen_reftransV1_0005499; organism=Gossypium arboreum; type=contig; length=1850bp
ATCAGCTCTCTGACAGTAAGGATTTTGGAATTCATGATGAGATTGATGAT
GATGATGACCATTATAATGATGGCATTGATTCTAATGATAGTCGCAAGGA
AGATTATGATGATTTTGGACATGACAAGGACTATATTTTAGATGAAGCAA
AATCTCATGATAAAAATGTTAATGAGTCCTCTACTTCCTTTAATGCTAAA
ACTAACAATGAGCATGCTGTCAAAGAGGTAAAGGAAGAATCCTCTTTATC
TAGGGAGGCCTCTCAAGATTTTGATGATGTAGATGCTGATTCTCATCATG
CTGGTTCTCTTAGTCATAAATCTGGAAAAAACTTACGGTCAAGTCCAAAG
AAAAAGCCAAGGCGCCGAAAATTTTCAGGTTCTTGTGAGATGAAATTAAT
GAATTCAACACACCTTGTGGAGCCTGTAGAAAGTCGGAAGTTTGCTCGAT
TTTCCTTACAGTATAAACAAATGGAAGAGAAGCCTGAAGGAGAAGACCAA
TGGGTACCTAGATTTGCCGGGCATCAGAATTTACAAGAACGTGAGGAATC
TTTTTTCGCACGTGACCAAAAGATAAATTGTGGGTTTGTTAAAGGTCCAC
AAGGATATCCAAGCACTGGCTTTGATCTGGCAGAAGATGATGTGAATTAT
ATCAGCAGGTGCCACATTGCTGTCATATCTTGCATTTTCGGAAATTCTGA
TCGCTTGAGGACACCTGCTGGCAAAATGGTTACTCGTTCGTCAAGGAAAA
ATGTCTGCTTTGTTATGTTTGTGGATGAAGCTACGATGCAAACACTTTAT
TCAGAAGGTCAAACACCTGATGGTGGTTTTATTGGTTTATGGAAGATAGT
GGTTGTAAAGAATCTTCCTTACACTGATATGCGTAGGGTGGGAAAAATAC
CAAAACTGTTACCGCATCGACTATTTCCTTTTGCAAGGTACTCAATCTGG
TTAGATAGCAAACTACGTCTACAGCGTGACCCCTTACAACTCCTGGATTA
CTTCTTGTGGCGAAAAGGTCATGAGTATGCCATTTCTAATCACTATGATC
GTCATTGTGTCTGGGAAGAGGTTGCGCAAAATAAGAAGCTGAACAAGTAT
AATCATACAGTCATTGATGAGCAATTTGATTTCTATCAGGCTGATGGACT
GAAAAGATTCGATGCTTCAGATCCTAACAAGCTTCTTCCTAGCAATGTGC
CTGAAGGTTCATTTATTGTTAGAGCACACACCCCGATGTCAAATTTGTTT
TCATGTCTTTGGTTCAATGAGGTTGAGCGGTTTACTCCCCGTGATCAGCT
AAGTTTTGCATATACATACCAGAAATTGCGAAGAACAAATCCTGACAAAC
CCTTTTATCTGAACATGTTCAAGGATTGTGAGAGGAGAGCCGTAGCTAAG
TTGTTTCGACATAGATCGGATGAGAAGCGATATATTCAGCAACGGGCAAC
ATTGTAAAATGTATGTTGTATTATCAAACCTTTTCTGTTGAATATAAAAA
GAATTATTTTTTGTACACTTTCCTTGGCCATGCTGGTTCATAAAGAAAGG
ATCAGAGTTGCATCGGTGGTGATGGTTGTTGACATAGAATGATGGACGTC
GAGGGAACAAAGTTTGTCGAGCATGGTGGAGGTATCTTGGTTGGGGGGGA
AAGTCCATTGGCTTTAATTTGCTAGAAAAATTCTGTTTTGCATAATTGTT
ATTTGTTCTTTTGTTCACATTGATTGCTTCGTCCATAGGTAAAAACGGAG
GACCAATACTAATGTACTTCTTACAACTAAAATTTGTTGTATTATTGCTA
TTACTATTATCATCATTTTTTGAACCTTTCAATTGGCTATTGAAGTTTTA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006852TOD1_MUCI70