CSIRO_D5chr02_60766021 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCSIRO_D5chr02_60766021
AliasChr02_60766021
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i02936Gh
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGATTTTGGAATGGTTGGCTCCTCTTGCTCACAATACGATTAGGTGGCAATCCGAGCATAA CCTTGAAGAGCAGCATATAATTTCTGGGTCAAATATACTT
3' Flanking SequenceTGGTACAGACGCTACACTTTGCGGATCAAGCAAAAACCGAGGCAGCTATCACGGAGCTTC TTGTTGGCCTTAATTATGTGTATAGGATTGGTGGTGCACA
SpeciesGossypium hirsutum
GermplasmNamcala
Sicala 40
Sicot 81
Sicala V-2
Sicot 71
Sicala 3-2
Lu Mian 14
Deltapine 90
Coker 315
Tamcot SP37
Delta Opal
Sicot 70
Sicot 189
Siokra 1-4
Riverina Paplar
Deltapine 16
MCU-5 (PI 694627)
Source TypeRNA-seq
Publication[view all]
ContactZhu, Qian-Hao
Wilson, Iain
Stelly, David M.
CommentData obtained 2014. SNP location is based on D5 JGI 221 position
Contact
NameDetails
Zhu, Qian-Hao
First name:Qian-Hao
Last name:Zhu
Title:Research Scientist
Institution:CSIRO
Address:CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601,
Country:Australia
Email:Qianhao.Zhu@csiro.au
Phone:61 2 62464903
Last update:24-Aug-2014
Wilson, Iain
Description:SNPs; Disease resistance
First name:Iain
Last name:Wilson
Title:Senior Scientist
Institution:CSIRO
Address:Black Mountain Laboratories Clunies Ross Street, Black Mountain, ACT 2601
Country:Australia
Email:iain.wilson@csiro.au
Phone:+61 (0)2 62465211
Last update:28-Feb-2010
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Germplasm
Stock NameType
Namcalaaccession
Sicala 40accession
Sicot 81accession
Sicala V-2accession
Sicot 71accession
Sicala 3-2accession
Lu Mian 14accession
Deltapine 90accession
Coker 315accession
Tamcot SP37accession
Delta Opalaccession
Sicot 70accession
Sicot 189accession
Siokra 1-4accession
Riverina Paplaraccession
Deltapine 16accession
MCU-5 (PI 694627)accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
13-79 x TM-1, F2 (2015 SNP)AD_ch01_At.01N/A17.55i02936GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch01_At.01N/A13.2i02936GhView
Sequence
>CSIRO_D5chr02_60766021 ID=CSIRO_D5chr02_60766021; Name=CSIRO_D5chr02_60766021; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
GATTTTGGAATGGTTGGCTCCTCTTGCTCACAATACGATTAGGTGGCAAT
CCGAGCATAACCTTGAAGAGCAGCATATAATTTCTGGGTCAAATATACTT
[T/C]TGGTACAGACGCTACACTTTGCGGATCAAGCAAAAACCGAGGCAG
CTATCACGGAGCTTCTTGTTGGCCTTAATTATGTGTATAGGATTGGTGGT
GCACA