CSIRO_D5chr02_1340258 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCSIRO_D5chr02_1340258
AliasChr02_1340258
Chr02_1340257
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
5' Flanking SequenceACCAAAATCACCTCATAAGAGTGGCAGGACTCGAAGTTGGTGTGGCAAATGAACTGATCC TTTTCTTCCTTTCTATTCTTTGGAGAACTCGTAGATGTGG
3' Flanking SequenceGGTTTCGGTTTTGTTGTTTCCTTGGAAGACCTGACAAAATCATACACCATCAAAACACGA ACATGGCACTAATATACGAATGTCTCGAAGCAAATTATCA
SpeciesGossypium hirsutum
GermplasmNamcala
Sicala 40
Sicot 81
Sicala V-2
Sicot 71
Sicala 3-2
Lu Mian 14
Deltapine 90
Coker 315
Tamcot SP37
Delta Opal
Sicot 70
Sicot 189
Siokra 1-4
Riverina Paplar
Deltapine 16
MCU-5 (PI 694627)
Source TypeRNA-seq
Publication[view all]
ContactZhu, Qian-Hao
Wilson, Iain
CommentData obtained 2014. SNP location is based on D5 JGI 221 position
Data obtained 2014. SNP location is based on D5 JGI 221 position. In the published map, the D5-pos in the name was 1 bp diff from its exactness.
Contact
NameDetails
Zhu, Qian-Hao
First name:Qian-Hao
Last name:Zhu
Title:Research Scientist
Institution:CSIRO
Address:CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601,
Country:Australia
Email:Qianhao.Zhu@csiro.au
Phone:61 2 62464903
Last update:24-Aug-2014
Wilson, Iain
Description:SNPs; Disease resistance
First name:Iain
Last name:Wilson
Title:Senior Scientist
Institution:CSIRO
Address:Black Mountain Laboratories Clunies Ross Street, Black Mountain, ACT 2601
Country:Australia
Email:iain.wilson@csiro.au
Phone:+61 (0)2 62465211
Last update:28-Feb-2010
Germplasm
Stock NameType
Namcalaaccession
Sicala 40accession
Sicot 81accession
Sicala V-2accession
Sicot 71accession
Sicala 3-2accession
Lu Mian 14accession
Deltapine 90accession
Coker 315accession
Tamcot SP37accession
Delta Opalaccession
Sicot 70accession
Sicot 189accession
Siokra 1-4accession
Riverina Paplaraccession
Deltapine 16accession
MCU-5 (PI 694627)accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1MCU-5 x Siokra 1-4, RIL (2015 SNP)AD_ch01_At.01N/A11.38Chr02_1340257View
Sequence
>CSIRO_D5chr02_1340258 ID=CSIRO_D5chr02_1340258; Name=CSIRO_D5chr02_1340258; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
ACCAAAATCACCTCATAAGAGTGGCAGGACTCGAAGTTGGTGTGGCAAAT
GAACTGATCCTTTTCTTCCTTTCTATTCTTTGGAGAACTCGTAGATGTGG
[C/G]GGTTTCGGTTTTGTTGTTTCCTTGGAAGACCTGACAAAATCATAC
ACCATCAAAACACGAACATGGCACTAATATACGAATGTCTCGAAGCAAAT
TATCA