CSIRO_D5chr01_5790296 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCSIRO_D5chr01_5790296
AliasChr01_5790296
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i18214Gh
TypeSNP
SNP AllelesC/T
5' Flanking SequenceCTTTTGTTTTATCCTTATAAATTCTCGAATTCTCATAGGCGTCGTTTCGAATTTCTTCTA GATCTTGCAATTGCAGTTTCCGATGCTTACTATCCTCATC
3' Flanking SequenceATCCTCATGTTACAATGCTTGATGACTCAATATGCCCTGTGTTCTAGTTCAACAAGAAGG TGACAGGGGTTGCCAAATATAAGCTGATAAGGTGACATAC
SpeciesGossypium hirsutum
GermplasmSiokra 1-4
MCU-5 (PI 694627)
Source Typerestriction-site associated DNA
RNA-seq and restriction-site associated DNA
Restriction EnzymeEcoRI; ApekI; SbfI
Publication[view all]
ContactZhu, Qian-Hao
Wilson, Iain
Stelly, David M.
CommentData obtained 2014. SNP location is based on D5 JGI 221 position
Contact
NameDetails
Zhu, Qian-Hao
First name:Qian-Hao
Last name:Zhu
Title:Research Scientist
Institution:CSIRO
Address:CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601,
Country:Australia
Email:Qianhao.Zhu@csiro.au
Phone:61 2 62464903
Last update:24-Aug-2014
Wilson, Iain
Description:SNPs; Disease resistance
First name:Iain
Last name:Wilson
Title:Senior Scientist
Institution:CSIRO
Address:Black Mountain Laboratories Clunies Ross Street, Black Mountain, ACT 2601
Country:Australia
Email:iain.wilson@csiro.au
Phone:+61 (0)2 62465211
Last update:28-Feb-2010
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr01chromosomeChr01:5790296..5790296 .
D5_07chromosomeD5_07:5864862..5865062 +
Chr07chromosomeChr07:47713738..47713938 -
Germplasm
Stock NameType
Siokra 1-4accession
MCU-5 (PI 694627)accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1MCU-5 x Siokra 1-4, RIL (2015 SNP)AD_ch07_At.07N/A73.45Chr01_5790296View
2Phytogen 72 x Stoneville 474, consbin (2017)AD_ch07_At.07N/A105.52i18214GhView
30-153 x sGK9708, RIL (2017)AD_ch16_Dt.07N/A48.24i18214GhView
Sequence
>CSIRO_D5chr01_5790296 ID=CSIRO_D5chr01_5790296; Name=CSIRO_D5chr01_5790296; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
CTTTTGTTTTATCCTTATAAATTCTCGAATTCTCATAGGCGTCGTTTCGA
ATTTCTTCTAGATCTTGCAATTGCAGTTTCCGATGCTTACTATCCTCATC
[C/T]ATCCTCATGTTACAATGCTTGATGACTCAATATGCCCTGTGTTCT
AGTTCAACAAGAAGGTGACAGGGGTTGCCAAATATAAGCTGATAAGGTGA
CATAC