UCD_Gh_M_010555, UCD_Gh_M_010555 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_010555
AliasGh_M_010555
Tm1_Mira454_Contig_44690_145
Gh_M_010555_Class_I
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00795Gh
TypeSNP
SNP AllelesG/A
5' Flanking SequenceCTTGTGACTTGTTCAACTATGTCAAATCTATAACTTAAGGAACACCAGGGGTTTATTGAG GAACATGTGGGGGTAGAGGTTTGAGTAGCTGGATTCGTTC
3' Flanking SequenceAAGAAACTCCGTGAACCACTCTCATCATTTGGAAAAGGGCTTGTTTAGCCTTTCCTTTGT GGCTACTCGAAATTGGCCTAGAATCAGCCGGCACTACCCC
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Stelly, David M.
Commentclass_I: no only SNPs derived from contigs with no known homeo-SNP positions in the contig within our data set
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A02chromosomeA02:75487509..75487709 -
Ghir_A02chromosomeGhir_A02:99710201..99710401 -
A02chromosomeA02:100193847..100194047 -
A02chromosomeA02:97384556..97384756 -
A02chromosomeA02:96015898..96016098 -
A02chromosomeA02:99847933..99848133 -
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch02_At.02N/A49i00795GhView
Sequence
>UCD_Gh_M_010555 ID=UCD_Gh_M_010555; Name=UCD_Gh_M_010555; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
CTTGTGACTTGTTCAACTATGTCAAATCTATAACTTAAGGAACACCAGGG
GTTTATTGAGGAACATGTGGGGGTAGAGGTTTGAGTAGCTGGATTCGTTC
[A/G]AAGAAACTCCGTGAACCACTCTCATCATTTGGAAAAGGGCTTGTT
TAGCCTTTCCTTTGTGGCTACTCGAAATTGGCCTAGAATCAGCCGGCACT
ACCCC