SWU00320, SWU00320 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU00320
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(AAT)5
Primer 1SWU00320_F: ATGGAATGGGCGAAGATG
Primer 2SWU00320_R: GTCATAGCAGAATCCGAGAA
Product Length106
PolymorphismP_ SWU00320
Publication[view all]
Comment#N/A
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1270supercontigscaffold_1270:5532..5634 +
D13chromosomeD13:4541863..4541968 -
A13chromosomeA13:5240508..5240610 -
CM018227.1chromosomeCM018227.1:4150063..4150180 -
CM018214.1chromosomeCM018214.1:4832585..4832687 -
D5_13chromosomeD5_13:3823050..3823158 -
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:4431977..4432079 -
D10_13chromosomeD10_13:3966127..3966235 -
At_chr13chromosomeAt_chr13:90750056..90750158 -
D13chromosomeD13:4331536..4331641 -
A13chromosomeA13:4632768..4632870 -
Ghir_D13chromosomeGhir_D13:4142713..4142818 -
Ghir_A13chromosomeGhir_A13:4831083..4831185 -
D13chromosomeD13:4168336..4168441 -
A13chromosomeA13:4812722..4812824 -
D13chromosomeD13:4352213..4352330 -
A13chromosomeA13:4780618..4780720 -
D13chromosomeD13:4036339..4036456 -
A13chromosomeA13:4857628..4857730 -
Gbar_D13chromosomeGbar_D13:3894164..3894281 -
Gbar_A13chromosomeGbar_A13:4874370..4874472 -
D13chromosomeD13:3921165..3921282 -
A13chromosomeA13:4745359..4745461 -
CM017635.1chromosomeCM017635.1:4088057..4088168 -
CM017622.1chromosomeCM017622.1:5015031..5015133 -
CM017661.1chromosomeCM017661.1:4424495..4424606 -
CM017648.1chromosomeCM017648.1:5029544..5029646 -
CM017713.1chromosomeCM017713.1:4015676..4015796 -
CM017700.1chromosomeCM017700.1:4650516..4650618 -
D13chromosomeD13:4458211..4458316 -
A13chromosomeA13:5130204..5130306 -
Chr13chromosomeChr13:5034811..5034913 -
Chr13chromosomeChr13:8074123..8074225 +
Chr13chromosomeChr13:3841684..3841792 -
B_13chromosomeB_13:90196245..90196347 +
Chr13chromosomeChr13:4111995..4112103 -
chr13chromosomechr13:3756750..3756855 -
Chr_13chromosomeChr_13:4101053..4101164 -
Chr13chromosomeChr13:4383604..4383709 -
Chr13chromosomeChr13:2873907..2874009 -
Chr13chromosomeChr13:4217482..4217587 -
Chr13chromosomeChr13:4217724..4218009 -
E13chromosomeE13:5640919..5641033 -
F13chromosomeF13:4225649..4225754 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x VGX100-2, RIL (2016)AD_ch01_At.01N/A333.3SWU0320View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch18_Dt.13N/A73.7SWU0320View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch18_Dt.13N/A32.43SWU00320View
Sequence
>SWU00320 ID=SWU00320; Name=SWU00320; organism=Gossypium hirsutum; type=genetic_marker; length=106bp
ATGGAATGGGCGAAGATGAGATTCAAGAATGGATGAAGATGATGACGACA
GATTTTGACTGGGACAATAATAATAATAATAAATATTTCTCGGATTCTGC
TATGAC