TMB2938, TMB2938 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB2938
Genbank IDBV679835
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679835.1
Source Typegenomic
Repeat Motif(TA)5
PCR ConditionAnnealing temperature: 55
Primer 1TMB2938_F: TCTCGAAAATCCCAAATATCG
Primer 2TMB2938_R: TGCATACACATGTTTTCACATTTT
Product Length228
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679835
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:51263455..51263684 -
D02chromosomeD02:51272346..51272572 -
CM018216.1chromosomeCM018216.1:48237219..48237446 -
CM018216.1chromosomeCM018216.1:48246221..48246447 -
D5_06chromosomeD5_06:36651595..36651823 -
Dt_chr5chromosomeDt_chr5:29597806..29598033 -
Dt_chr5chromosomeDt_chr5:29606675..29606901 -
D02chromosomeD02:48746750..48746979 -
D02chromosomeD02:48755641..48755867 -
Ghir_D02chromosomeGhir_D02:50564755..50564983 -
Ghir_D02chromosomeGhir_D02:50573641..50573866 -
scaffold42_subseq_1_149247_obj_D02supercontigscaffold42_subseq_1_149247_obj_D02:26415..26641 +
D02chromosomeD02:51892775..51893002 -
D02chromosomeD02:51901642..51901868 -
D02chromosomeD02:49344039..49344268 -
D02chromosomeD02:49352930..49353156 -
Dt02chromosomeDt02:49418200..49418427 -
Dt02chromosomeDt02:49428330..49428556 -
scaffold26709supercontigscaffold26709:1520..1747 -
scaffold26709supercontigscaffold26709:11650..11876 -
Gbar_D02chromosomeGbar_D02:48718057..48718284 +
Gbar_D02chromosomeGbar_D02:48709060..48709286 +
D02chromosomeD02:50134005..50134232 -
D02chromosomeD02:50143007..50143233 -
CM017624.1chromosomeCM017624.1:50956396..50956621 -
CM017624.1chromosomeCM017624.1:50965388..50965614 -
CM017650.1chromosomeCM017650.1:52403014..52403241 -
CM017650.1chromosomeCM017650.1:52411991..52412217 -
CM017702.1chromosomeCM017702.1:49608739..49608966 -
CM017702.1chromosomeCM017702.1:49617753..49617979 -
D02chromosomeD02:52822153..52822382 -
D02chromosomeD02:52831044..52831270 -
Contig00265chromosomeContig00265:107639..107867 +
Contig00265chromosomeContig00265:98543..98770 +
Contig00265chromosomeContig00265:116664..116892 +
Chr05chromosomeTMB2938:1..515 .
Chr05:43987720..43987995 +
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679835.1BV679835.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A65.19TMB2938View
2TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A61.2TMB2938View
3W10 x TM-1, F2:3 (2015)AD_ch14_Dt.02N/A67.7TMB2938View
4TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A61.23TMB2938View
Sequence
>TMB2938 ID=TMB2938; Name=TMB2938; organism=Gossypium hirsutum; type=genetic_marker; length=228bp
TCTCGAAAATCCCAAATATCGAATATTACATGATCTGAAAGCCTTTGAAC
AAGAATGGTTTCAATGCTTTGATGAAACCAAATATATTTTCTTTAAAAGT
ATGATAAAATGTTATTGAATAACATGAAACAAATACTTTAATTTAAATTA
TATATGTTTATGTATTTACAAAATTTGTATATATATATGTATAAGTACAA
TATAAAAATGTGAAAACATGTGTATGCA