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Marker Overview
Name | TMB2386 |
Alias | TMB200-1-M9
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Genbank ID | BV679753 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | TM-1 |
Source Sequence | BV679753.1
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Source Type | genomic |
Repeat Motif | (TTA)10 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | TMB2386_F: GAAGAGTCGAAATAAAAATACCACAA |
Primer 2 | TMB2386_R: ACGGTGCAAACAGGTGAAGT |
Product Length | 152 |
Contact | Yu, John Z. (Zhi-Hong)
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Comment | Primer data obtained in 2005-10 |
Germplasm
Stock Name | Type |
TM-1 | breeding_germplasm |
Cross References
External references for this genetic_marker
Relationships
This genetic_marker is adjacent to the following primer feature(s):
This genetic_marker is adjacent to the following QTL feature(s):
The following marker_locus feature(s) are an instance of this genetic_marker:
The following sequence_feature feature(s) derives from this genetic_marker:
Alignments
The following features are aligned
Sequence
>TMB2386 ID=TMB2386|Name=TMB2386|organism=Gossypium hirsutum|type=genetic_marker|length=152bp GAAGAGTCGAAATAAAAATACCACAAAGTTAAAAAAGGTAACATTTTATT GTTTATTGTTTATTATTATTATTATTATTATTATTATTATTTTGATTTTT CTCTTTTTGAAACAAAAAATAAAAAAGGAGAAACTTCACCTGTTTGCACC GT
Map Positions
# | Map Name | Linkage Group | Bin | Chromosome | Position | Locus | MapViewer |
1 | Emian-22 x 3-79, BC1 (2011) | Emian-22 x 3-79, BC1 (2011).E3-BC1_chr02 | N/A | AD_chr.02 | 51.47 | TMB2386a | View |
2 | Emian-22 x 3-79, BC1 (2011) | Emian-22 x 3-79, BC1 (2011).E3-BC1_chr14 | N/A | AD_chr.14 | 92.42 | TMB2386c | View |
3 | Emian-22 x 3-79, BC1 (2011) | Emian-22 x 3-79, BC1 (2011).E3-BC1_chr24 | N/A | AD_chr.24 | 79.92 | TMB2386b | View |
4 | Emian-22 x 3-79, BC1 (2015) | E3-BC1-2015_chr24 | N/A | AD_chr.24 | 187 | TMB2386b | View |
5 | TM-1 x 3-79, RIL (2012) | TM-1 x 3-79, RIL (2012).T3-RIL.12_c02 | N/A | AD_chr.02 | 89.84 | tmb2386 | View |
6 | AD-genome wide Reference Map (2009) | AD-genome wide Reference Map (2009).Ref-chr02 | N/A | AD_chr.02 | 162 | tmb2386 | View |
7 | TM-1 x 3-79, RIL (2014) | T3-RIL.14_chr02 | N/A | AD_chr.02 | 91.4 | tmb2386 | View |
8 | GX1135 x GX100-2, F2 (2013) | GG-F2_chr02-1 | N/A | AD_chr.02 | 28.9 | tmb2386 | View |
9 | GX1135 x GX100-2, RIL (2015) | GG-RIL.15_chr02-2 | N/A | AD_chr.02 | 53.9 | tmb2386 | View |
10 | GX1135 x GX100-2, RIL (2016) | GG-RIL.16_chr02-2 | N/A | AD_chr.02 | 53.9 | tmb2386 | View |
11 | CCRI 12-4 x (AD)5-7, F2 (2015) | CAD5-F2_chr02 | N/A | At.02 | 58.6 | tmb2386 | View |
12 | CCRI 12-4 x (AD)5-7, F2 (2015) | CAD5-F2_chr14 | N/A | Dt.02 | 24.7 | tmb2386 | View |
13 | TM-1 x 3-79, RIL (2012.v3) | T3-RIL.12v3_chr.02 | N/A | AD_chr.02 | 91.39 | TMB2386 | View |
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