TMB2386, TMB2386 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB2386
AliasTMB200-1-M9
Genbank IDBV679753
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679753.1
Source Typegenomic
Repeat Motif(TTA)10
PCR ConditionAnnealing temperature: 55
Primer 1TMB2386_F: GAAGAGTCGAAATAAAAATACCACAA
Primer 2TMB2386_R: ACGGTGCAAACAGGTGAAGT
Product Length152
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679753
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679753.1BV679753.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch02_At.02N/A51.47TMB2386aView
2Emian-22 x 3-79, BC1 (2011)AD_ch14_Dt.02N/A92.42TMB2386cView
3Emian-22 x 3-79, BC1 (2011)AD_ch24_Dt.08N/A79.92TMB2386bView
4Emian-22 x 3-79, BC1 (2015)AD_ch24_Dt.08N/A187TMB2386bView
5TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A89.84tmb2386View
6AD-genome wide Reference Map (2009)AD_ch02_At.02N/A162tmb2386View
7TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A91.4tmb2386View
8GX1135 x GX100-2, F2 (2013)AD_ch02_At.02N/A28.9tmb2386View
9GX1135 x GX100-2, RIL (2015)AD_ch02_At.02N/A53.9tmb2386View
10GX1135 x GX100-2, RIL (2016)AD_ch02_At.02N/A53.9tmb2386View
11CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A58.6tmb2386View
12CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch14_Dt.02N/A24.7tmb2386View
13TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A91.39TMB2386View
Sequence
>TMB2386 ID=TMB2386; Name=TMB2386; organism=Gossypium hirsutum; type=genetic_marker; length=152bp
GAAGAGTCGAAATAAAAATACCACAAAGTTAAAAAAGGTAACATTTTATT
GTTTATTGTTTATTATTATTATTATTATTATTATTATTATTTTGATTTTT
CTCTTTTTGAAACAAAAAATAAAAAAGGAGAAACTTCACCTGTTTGCACC
GT