TMB1497, TMB1497 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB1497
AliasTMH B6-F5
Genbank IDBV679589
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679589.1
Source Typegenomic
Repeat Motif(GA)10
PCR ConditionAnnealing temperature: 55
Primer 1TMB1497_F: ACCTCAGCTTTACATGCAAAG
Primer 2TMB1497_R: CATTTCTATACGAACACAGAGC
Product Length213
PolymorphismP_ TMB1497
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679589
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:899257..899468 +
A02chromosomeA02:89568195..89568405 -
CM018217.1chromosomeCM018217.1:830820..831031 +
CM018203.1chromosomeCM018203.1:99043193..99043403 -
D5_02chromosomeD5_02:790495..790705 +
KI_06chromosomeKI_06:40364612..40364817 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:932521..932732 +
D10_02chromosomeD10_02:744794..745002 +
scaffold1588.1supercontigscaffold1588.1:319471..319683 +
Dt_chr5chromosomeDt_chr5:16890852..16891063 -
D03chromosomeD03:863829..864040 +
A02chromosomeA02:82577319..82577529 -
Ghir_D03chromosomeGhir_D03:860063..860274 +
Ghir_A02chromosomeGhir_A02:107223015..107223225 -
D03chromosomeD03:845960..846171 +
A02chromosomeA02:107427240..107427450 -
D03chromosomeD03:857909..858120 +
A02chromosomeA02:104883550..104883762 -
D03chromosomeD03:862423..862634 +
A02chromosomeA02:103461052..103461262 -
Dt03chromosomeDt03:1026128..1026339 +
scaffold26815supercontigscaffold26815:38429..38640 +
scaffold16048supercontigscaffold16048:504768..504978 +
Gbar_D03chromosomeGbar_D03:823478..823689 +
Gbar_A02chromosomeGbar_A02:99358050..99358260 -
D03chromosomeD03:831341..831552 +
A02chromosomeA02:101291246..101291456 -
CM017625.1chromosomeCM017625.1:825826..826037 +
CM017611.1chromosomeCM017611.1:104268462..104268674 -
CM017651.1chromosomeCM017651.1:887591..887802 +
CM017637.1chromosomeCM017637.1:109022220..109022430 -
CM017703.1chromosomeCM017703.1:853124..853335 +
CM017689.1chromosomeCM017689.1:101441388..101441598 -
D03chromosomeD03:902635..902846 +
A02chromosomeA02:107367065..107367275 -
Chr02chromosomeChr02:92068977..92069185 -
Chr02chromosomeChr02:101670732..101670943 -
Chr02chromosomeChr02:800820..801030 +
B_04chromosomeB_04:73061616..73061826 -
Chr03chromosomeChr03:804143..804359 +
chr03chromosomechr03:867246..867454 +
Chr_03chromosomeChr_03:691025..691233 +
Chr03chromosomeChr03:812017..812229 +
Chr03chromosomeChr03:686687..686895 +
Chr03chromosomeChr03:631739..631947 +
Chr03chromosomeChr03:852681..852889 +
E02chromosomeE02:593717..593928 +
F02chromosomeF02:769706..769932 +
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679589.1BV679589.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2016)AD_ch02_At.02N/A0TMB1497View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A10.4TMB1497View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A104.67TMB1497View
Sequence
>TMB1497 ID=TMB1497; Name=TMB1497; organism=Gossypium hirsutum; type=genetic_marker; length=213bp
ACCTCAGCTTTACATGCAAAGAAAAAAGAGAGAGAGAGAGAGAGAGAAAG
GGTGCAATCCTCTAAGCGAGTAATGGTGAAAATGGCGTGGGCAGTGTTCT
TGTACGTCGGGCAATTATTAACTGGGCCATCGTAAACTGTTTCAGAACTA
AATCCAATTAATACCAAAAGGAAAACATTTTTTCTCTTTAAGCTCTGTGT
TCGTATAGAAATG