TMB1120, TMB1120 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB1120
AliasTMH A57-K11
Genbank IDBV679485
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679485.1
Source Typegenomic
Repeat Motif(CA)11
PCR ConditionAnnealing temperature: 55
Primer 1TMB1120_F: TTCCTTCATTGCAGCAACAC
Primer 2TMB1120_R: CACAAACTGGGTGGTAAAAGC
Product Length181
PolymorphismP_ TMB1120
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679485
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:3438409..3438577 +
A05chromosomeA05:3856070..3856250 +
CM018219.1chromosomeCM018219.1:3168819..3168987 +
CM018206.1chromosomeCM018206.1:3791683..3791861 +
D5_05chromosomeD5_05:3053249..3053419 +
KI_05chromosomeKI_05:2795346..2795516 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:3751922..3752094 +
D10_05chromosomeD10_05:57449740..57449910 -
CM016626.1chromosomeCM016626.1:5390213..5390385 +
At_chr9chromosomeAt_chr9:50964039..50964219 +
Dt_chr9chromosomeDt_chr9:66114507..66114675 -
D05chromosomeD05:3279283..3279451 +
A05chromosomeA05:3376980..3377225 +
Ghir_D05chromosomeGhir_D05:3412738..3412906 +
Ghir_A05chromosomeGhir_A05:3859739..3859919 +
D05chromosomeD05:3208587..3208755 +
A05chromosomeA05:3740057..3740237 +
D05chromosomeD05:3323282..3323450 +
A05chromosomeA05:3833287..3833467 +
D05chromosomeD05:3183614..3183782 +
A05chromosomeA05:4241234..4241412 +
At05chromosomeAt05:1932609..1932787 +
scaffold17586supercontigscaffold17586:142774..142952 +
scaffold10000supercontigscaffold10000:147525..147693 -
Gbar_D05chromosomeGbar_D05:3320203..3320371 +
Gbar_A05chromosomeGbar_A05:3489004..3489182 +
D05chromosomeD05:3468668..3468836 +
A05chromosomeA05:3963032..3963210 +
CM017627.1chromosomeCM017627.1:3289092..3289260 +
CM017614.1chromosomeCM017614.1:3800866..3801042 +
CM017653.1chromosomeCM017653.1:3456362..3456530 +
CM017640.1chromosomeCM017640.1:3897041..3897219 +
CM017705.1chromosomeCM017705.1:3280425..3280593 +
CM017692.1chromosomeCM017692.1:3761170..3761348 +
D05chromosomeD05:3347769..3347937 +
A05chromosomeA05:3946103..3946283 +
Chr05chromosomeChr05:4091724..4091908 +
Chr05chromosomeChr05:3625952..3626124 +
Chr05chromosomeChr05:3058628..3058798 +
B_05chromosomeB_05:82445299..82445473 -
Chr09chromosomeChr09:3173266..3173436 +
chr09chromosomechr09:3004060..3004230 +
Chr_09chromosomeChr_09:3341437..3341607 +
Chr09chromosomeChr09:3257172..3257344 +
Chr09chromosomeChr09:3044718..3045367 +
Chr09chromosomeChr09:2431372..2431544 +
Chr09chromosomeChr09:2986250..2986420 +
E05chromosomeE05:4089459..4089631 +
F05chromosomeF05:3216161..3216329 +
Chr13chromosomeChr13:194879316..194879516 -
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679485.1BV679485.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch19_Dt.05N/A28.7TMB1120View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch05_At.05N/A92.3TMB1120View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch05_At.05N/A22.93TMB1120View
Sequence
>TMB1120 ID=TMB1120; Name=TMB1120; organism=Gossypium hirsutum; type=genetic_marker; length=181bp
TTCCTTCATTGCAGCAACACCCTATAGTGTCCGATTGTGTTCAAACCATA
AAAACTTGCTATTTTCCATTTGCAAGGAAGCACACACACACACACACACA
CACTGTAAAATATAAAAAGATTCAAAAAGTTGCTCAAGTTTTATCCGATT
TTCATAAGGAGCTTTTACCACCCAGTTTGTG