TMB0968, TMB0968 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0968
AliasTMH A38-F8
Genbank IDBV679459
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679459.1
Source Typegenomic
Repeat Motif(GA)8
PCR ConditionAnnealing temperature: 55
Primer 1TMB0968_F: TTGATGCTAAGGCCCAAAAC
Primer 2TMB0968_R: AAATGCGTTCTCCGTGTAGC
Product Length225
PolymorphismP_ TMB0968
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679459
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:45588043..45588267 -
D08chromosomeD08:45578542..45578766 -
CM018222.1chromosomeCM018222.1:42404400..42404624 -
CM018222.1chromosomeCM018222.1:42394912..42395135 -
D5_13chromosomeD5_13:48106071..48106288 +
D5_08chromosomeD5_08:39117944..39118169 -
D5_08chromosomeD5_08:39127645..39127867 -
D08chromosomeD08:42050272..42050496 -
D08chromosomeD08:42040770..42040994 -
Ghir_D08chromosomeGhir_D08:44928054..44928278 -
Ghir_D08chromosomeGhir_D08:44918554..44918777 -
scaffold6856_obj_D08supercontigscaffold6856_obj_D08:331..555 +
D08chromosomeD08:45928157..45928381 -
D08chromosomeD08:44798600..44798824 -
D08chromosomeD08:44789103..44789327 -
D08chromosomeD08:42081533..42081757 -
D08chromosomeD08:42072031..42072255 -
Dt08chromosomeDt08:42314708..42314932 -
Dt08chromosomeDt08:42298062..42298285 -
scaffold5175supercontigscaffold5175:466562..466786 -
scaffold5175supercontigscaffold5175:449916..450139 -
Gbar_D08chromosomeGbar_D08:42351367..42351591 -
Gbar_D08chromosomeGbar_D08:42341877..42342100 -
D08chromosomeD08:44483130..44483354 -
D08chromosomeD08:44473644..44473867 -
CM017630.1chromosomeCM017630.1:43842588..43842812 -
CM017630.1chromosomeCM017630.1:43833112..43833335 -
CM017656.1chromosomeCM017656.1:45584419..45584638 -
CM017656.1chromosomeCM017656.1:45574918..45575141 -
CM017708.1chromosomeCM017708.1:43034692..43034917 -
CM017708.1chromosomeCM017708.1:43025200..43025423 -
D08chromosomeD08:45398106..45398330 -
D08chromosomeD08:45388605..45388829 -
Chr13chromosomeChr13:48100188..48100404 +
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679459.1BV679459.1Gossypium hirsutumsequence_feature


Sequence
>TMB0968 ID=TMB0968; Name=TMB0968; organism=Gossypium hirsutum; type=genetic_marker; length=225bp
TTGATGCTAAGGCCCAAAACGGTGCCATTTTGTATCTAATATAAATACCA
AAAAAAAAGAAAAAGAAAACAGTTTTTACTTCATTTTTCAGAAAAAAAAG
AAAAAAGAACAGAGAGCTCGGTCTCTCTCTCTCTCTCAGGCTTCAAGCTC
CGACCAAAAGGCCGTCGCTGTCGCTGCCATGACTCTGCCATAAGCGGTGG
TCCGAGCTACACGGAGAACGCATTT