TMB0840, TMB0840 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0840
AliasTMH B18-C4
Genbank IDBV679437
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679437.1
Source Typegenomic
Repeat Motif(GA)22
PCR ConditionAnnealing temperature: 55
Primer 1TMB0840_F: TTTTCGCTTTGCATGAAGAC
Primer 2TMB0840_R: CGAAATGTATTCGGGGTTTG
Product Length236
PolymorphismP_ TMB0840
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679437
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:20069747..20069982 -
A05chromosomeA05:20152769..20152993 -
CM018206.1chromosomeCM018206.1:19518809..19519037 -
CM018206.1chromosomeCM018206.1:19465108..19465327 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:19719879..19720104 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:19777384..19777607 -
CM016626.1chromosomeCM016626.1:29389466..29389688 -
CM016626.1chromosomeCM016626.1:29370984..29371190 -
At_chr9chromosomeAt_chr9:42465513..42465758 -
At_chr9chromosomeAt_chr9:42516366..42516590 -
A05chromosomeA05:18220185..18220412 -
A05chromosomeA05:18271356..18271580 -
Ghir_A05chromosomeGhir_A05:19881784..19882017 -
Ghir_A05chromosomeGhir_A05:19935128..19935350 -
A05chromosomeA05:19292298..19292533 -
A05chromosomeA05:19349705..19349929 -
A05chromosomeA05:19893226..19893457 -
A05chromosomeA05:19946598..19946820 -
A05chromosomeA05:20056564..20056799 -
A05chromosomeA05:20109961..20110185 -
scaffold4750supercontigscaffold4750:56666..56885 -
scaffold19770supercontigscaffold19770:17544..17766 -
Gbar_A05chromosomeGbar_A05:19099241..19099469 -
Gbar_A05chromosomeGbar_A05:19045551..19045770 -
A05chromosomeA05:19761488..19761725 -
A05chromosomeA05:19814703..19814929 -
CM017614.1chromosomeCM017614.1:19527834..19528057 -
CM017614.1chromosomeCM017614.1:19581506..19581720 -
CM017640.1chromosomeCM017640.1:19889997..19890228 -
CM017640.1chromosomeCM017640.1:19946938..19947154 -
CM017692.1chromosomeCM017692.1:19329307..19329535 -
CM017692.1chromosomeCM017692.1:19274418..19274637 -
A05chromosomeA05:20187174..20187407 -
A05chromosomeA05:20240562..20240786 -
Chr05chromosomeChr05:21083803..21084039 -
Chr05chromosomeChr05:21015946..21016165 -
B_05chromosomeB_05:66777610..66777812 +
chr09chromosomechr09:15179740..15179940 -
chr09chromosomechr09:15180192..15180847 -
Chr09_5140108chromosomeChr09_5140108:163..365 +
Chr09chromosomeChr09:17519636..17519836 -
Chr09chromosomeChr09:12548106..12548306 -
Chr09chromosomeChr09:14554977..14556182 -
Chr13chromosomeChr13:171523930..171524134 +
Chr13chromosomeChr13:171508642..171508846 +
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679437.1BV679437.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A67.87TMB0840View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A98TMB0840View
3TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A133.6TMB0840aView
4TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A133.57TMB0840aView
Sequence
>TMB0840 ID=TMB0840; Name=TMB0840; organism=Gossypium hirsutum; type=genetic_marker; length=236bp
TTTTCGCTTTGCATGAAGACTAATGGCATCGTTGAATGATTCAATTTAGC
ATGCATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
AGTAGTGCTGCCTTCAACTGTATAAATACCCATGACATGCCTTCCTCCAG
AGAGCATCAAACATACTAACTAACCAGTAAAGCTTTTAGACATCTGATTC
TACTAGTTCTCTTGCTCAAACCCCGAATACATTTCG