TMB0791, TMB0791 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0791
AliasTMH B10-M20
Genbank IDBV679419
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679419.1
Source Typegenomic
Repeat Motif(GA)8
PCR ConditionAnnealing temperature: 55
Primer 1TMB0791_F: TCCTCAACGACTGCGTTAAA
Primer 2TMB0791_R: CCTCTTCGCTTTCCTTTCCT
Product Length201
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679419
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:15886363..15886565 -
A01chromosomeA01:21048285..21048483 -
CM018215.1chromosomeCM018215.1:15629225..15629427 -
CM018202.1chromosomeCM018202.1:19272838..19273036 -
D5_01chromosomeD5_01:14950140..14950341 -
KI_01chromosomeKI_01:9357511..9357709 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:21390298..21390496 -
D10_01chromosomeD10_01:45297621..45297823 +
CM016614.1chromosomeCM016614.1:28549478..28549688 -
Dt_chr2chromosomeDt_chr2:41267551..41267753 +
D01chromosomeD01:14750779..14750981 -
A01chromosomeA01:19806075..19806273 -
Scaffold1210supercontigScaffold1210:338440..338638 -
Ghir_D01chromosomeGhir_D01:16131503..16131705 -
D01chromosomeD01:15753711..15753913 -
A01chromosomeA01:19665485..19665683 -
D01chromosomeD01:15658292..15658494 -
A01chromosomeA01:20164391..20164591 -
D01chromosomeD01:16025507..16025709 -
A01chromosomeA01:18488150..18488348 -
scaffold8377supercontigscaffold8377:410620..410818 +
scaffold12827supercontigscaffold12827:7205..7407 +
Gbar_D01chromosomeGbar_D01:16234631..16234833 -
Gbar_A01chromosomeGbar_A01:19420089..19420287 -
D01chromosomeD01:15973586..15973788 -
A01chromosomeA01:19239341..19239539 -
CM017623.1chromosomeCM017623.1:15887886..15888088 -
CM017610.1chromosomeCM017610.1:20772774..20772972 -
CM017649.1chromosomeCM017649.1:16782678..16782880 -
CM017636.1chromosomeCM017636.1:19859475..19859673 -
CM017701.1chromosomeCM017701.1:16011132..16011334 -
CM017688.1chromosomeCM017688.1:19452113..19452311 -
D01chromosomeD01:16376831..16377033 -
A01chromosomeA01:20301310..20301508 -
Chr01chromosomeChr01:20422816..20423014 -
Chr01chromosomeChr01:21659673..21659871 -
Chr01chromosomeChr01:14846813..14847015 -
B_01chromosomeB_01:21646032..21646236 -
Chr02chromosomeChr02:15836095..15836297 -
chr02chromosomechr02:13875878..13876080 -
Chr_02chromosomeChr_02:12030927..12031129 -
Chr02chromosomeChr02:15631030..15631232 -
Chr02chromosomeChr02:14757811..14758013 -
Chr02chromosomeChr02:10443032..10443234 -
Chr02chromosomeChr02:13406908..13407110 -
E01chromosomeE01:23464839..23465039 -
F01chromosomeF01:17611572..17611766 -
Chr01chromosomeChr01:162335216..162335430 +
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679419.1BV679419.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch01_At.01N/A24.8TMB0791View
2DH962 x Jinmian-6, F2 (2009)AD_chUN/A81.8TMB0791View
3Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A42.3TMB0791View
4DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A86.7TMB0791View
5DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A86.7TMB0791View
6DH962 x Ji Mian 5, RIL (2015)AD_ch01_At.01N/A47.2TMB0791View
7DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A47.2TMB0791View
8Yumian-1 x T586, RIL (2009)AD_ch01_At.01N/A15TMB0791/210tView
Sequence
>TMB0791 ID=TMB0791; Name=TMB0791; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
TCCTCAACGACTGCGTTAAACTACACAAAGGGAAAAAAGATGAAGTTATG
CGTAAACAAAAACCAGACATAAATTCAACGCGAATTAAAACCTAGGAGAG
AGAGAGAGAGAGTAGGAAATACAGAGTTGTGGTGATGGCGAAGGTGAAAG
TGCTGCGATTCGTTTGGAGAAGGAGCGAGAAAGGAAAGGAAAGCGAAGAG
G