TMB0764, TMB0764 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0764
AliasTMH A20-A17
Genbank IDBV679414
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679414.1
Source Typegenomic
Repeat Motif(GA)7
PCR ConditionAnnealing temperature: 55
Primer 1TMB0764_F: GCAACGATCCAGACAGTCAA
Primer 2TMB0764_R: TAATTGCATGGCATCGAAAA
Product Length199
PolymorphismP_ TMB0764
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D09chromosomeD09:40052095..40052288 -
A09chromosomeA09:67527064..67527255 -
CM018223.1chromosomeCM018223.1:37808057..37808252 -
CM018210.1chromosomeCM018210.1:63168915..63169106 -
D5_09chromosomeD5_09:31612868..31613063 -
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:69924359..69924550 -
D10_09chromosomeD10_09:11823266..11823465 +
CM016622.1chromosomeCM016622.1:18710073..18710273 +
Dt_chr6chromosomeDt_chr6:11774869..11775062 +
At_chr6chromosomeAt_chr6:51051143..51051334 +
D09chromosomeD09:37861161..37861354 -
A09chromosomeA09:62617250..62617441 -
Ghir_D09chromosomeGhir_D09:39900086..39900279 -
Ghir_A09chromosomeGhir_A09:67318529..67318720 -
D09chromosomeD09:39616034..39616227 -
A09chromosomeA09:69101805..69101996 -
D09chromosomeD09:39657323..39657516 -
A09chromosomeA09:69073255..69073446 -
D09chromosomeD09:37727269..37727462 -
A09chromosomeA09:65968216..65968407 -
Dt09chromosomeDt09:40530997..40531192 -
scaffold3331supercontigscaffold3331:16266..16461 -
scaffold10295supercontigscaffold10295:184724..184915 -
Gbar_D09chromosomeGbar_D09:38500709..38500904 -
Gbar_A09chromosomeGbar_A09:63620587..63620778 -
D09chromosomeD09:41021430..41021625 -
A09chromosomeA09:65070750..65070941 -
CM017631.1chromosomeCM017631.1:38671949..38672146 -
CM017618.1chromosomeCM017618.1:64878453..64878644 -
CM017657.1chromosomeCM017657.1:40103355..40103550 -
CM017709.1chromosomeCM017709.1:39304382..39304577 -
CM017696.1chromosomeCM017696.1:64990297..64990488 -
D09chromosomeD09:41345403..41345596 -
A09chromosomeA09:70392186..70392377 -
Chr09chromosomeChr09:69133171..69133362 -
Chr09chromosomeChr09:72388043..72388234 -
Chr09chromosomeChr09:37839223..37839418 -
B_09chromosomeB_09:56454738..56455367 -
Chr06chromosomeChr06:38286557..38286752 -
Chr06_5104328chromosomeChr06_5104328:6876..7075 +
Chr06chromosomeChr06:28952388..28952583 -
Chr06chromosomeChr06:21640008..21640211 -
Chr06chromosomeChr06:26720097..26720726 -
E09chromosomeE09:16554351..16554540 +
F09chromosomeF09:57647487..57647686 -
Chr09chromosomeChr09:113662789..113662992 -
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679414.1BV679414.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch23_Dt.09N/A71.76TMB0764View
2TM-1 x 3-79, RIL (2014)AD_ch23_Dt.09N/A69.4TMB0764View
3TM-1 x 3-79, RIL (2012.v3)AD_ch23_Dt.09N/A69.45TMB0764View
Sequence
>TMB0764 ID=TMB0764; Name=TMB0764; organism=Gossypium hirsutum; type=genetic_marker; length=199bp
GCAACGATCCAGACAGTCAAACCTTGTCATTAAGCCTTATGTAGCAGAAG
GTTTAGTTATGCCACCAGAGAGAGCAAGAGAGAGAGAGAGATACAGTGGG
TCAAGGGATAAGTTTTACCTGATTCTGAGCTTTTACTTCCTCTGCTTGTG
AAATTTTAATGTCAATTGTCTAAAGATTCTTTTCGATGCCATGCAATTA