TMB0696, TMB0696 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0696
AliasTMH A2-M21
Genbank IDBV679411
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679411.1
Source Typegenomic
Repeat Motif(GA)7
PCR ConditionAnnealing temperature: 55
Primer 1TMB0696_F: CCTTTGATGTCACGGTGAAG
Primer 2TMB0696_R: TCGACCTGGGATGAGATTTT
Product Length221
PolymorphismP_ TMB0696
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679411
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:54474579..54474799 +
A08chromosomeA08:105189278..105189510 +
CM018222.1chromosomeCM018222.1:51137326..51137546 +
CM018209.1chromosomeCM018209.1:100734690..100734924 +
D5_08chromosomeD5_08:47292243..47292463 +
KI_08chromosomeKI_08:31147768..31147984 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:109392442..109392677 +
D10_08chromosomeD10_08:13719484..13719705 -
CM016621.1chromosomeCM016621.1:34138141..34138357 +
scaffold349.1supercontigscaffold349.1:868242..868476 +
Dt_chr10chromosomeDt_chr10:7687740..7687960 -
D08chromosomeD08:51112456..51112676 +
A08chromosomeA08:86318832..86319066 +
Ghir_D08chromosomeGhir_D08:53736769..53736989 +
Ghir_A08chromosomeGhir_A08:104495682..104495914 +
D08chromosomeD08:54599075..54599295 +
A08chromosomeA08:107640749..107640983 +
D08chromosomeD08:53631257..53631477 +
A08chromosomeA08:107311123..107311357 +
D08chromosomeD08:50921918..50922138 +
A08chromosomeA08:103364617..103364851 +
scaffold1195supercontigscaffold1195:155454..155674 -
Gbar_D08chromosomeGbar_D08:51101348..51101568 +
Gbar_A08chromosomeGbar_A08:101332242..101332476 +
D08chromosomeD08:53185598..53185818 +
A08chromosomeA08:102592522..102592756 +
CM017630.1chromosomeCM017630.1:52545524..52545744 +
CM017617.1chromosomeCM017617.1:100891767..100892009 +
CM017656.1chromosomeCM017656.1:54474565..54474785 +
CM017643.1chromosomeCM017643.1:110502105..110502343 +
CM017708.1chromosomeCM017708.1:51734547..51734767 +
CM017695.1chromosomeCM017695.1:101599393..101599627 +
D08chromosomeD08:54237931..54238151 +
A08chromosomeA08:109155712..109155946 +
Chr08chromosomeChr08:112519290..112519530 +
Chr08chromosomeChr08:113451367..113451602 +
Chr08chromosomeChr08:48191126..48191346 +
B_08chromosomeB_08:85489532..85489750 +
Chr04chromosomeChr04:49573895..49574123 +
chr04chromosomechr04:37057766..37057986 +
Chr_04chromosomeChr_04:33607658..33607881 +
Chr04chromosomeChr04:52038358..52038574 +
Chr04chromosomeChr04:32624354..32624578 +
Chr04chromosomeChr04:32839152..32839372 +
E08chromosomeE08:100862766..100862962 +
F08chromosomeF08:88165454..88165698 +
Chr08chromosomeChr08:35680042..35680260 -
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679411.1BV679411.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A44TMB0696View
Sequence
>TMB0696 ID=TMB0696; Name=TMB0696; organism=Gossypium hirsutum; type=genetic_marker; length=221bp
CCTTTGATGTCACGGTGAAGTACTTGATTTACATGACAATAGTGAAGCCC
AGTAAGAAGTTGCCTCATGTAACACTGGAAGAAAGGGTAGCATGGTTAGA
AGAACAAAATTATGATGATTGAATGCAGAGTGCTCTCCCTCTCTCTCTCT
CTCTTCTATCTTTTTTGCCTATAAAACGGGTTACCTTAATTTGGGGAACT
GAAAATCTCATCCCAGGTCGA