TMB0598, TMB0598 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0598
AliasTMN07
Genbank IDBV679389
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679389.1
Source Typegenomic
Repeat Motif(GAA)10
PCR ConditionAnnealing temperature: 55
Primer 1TMB0598_F: TGAGCATATTCTTGCAAACGA
Primer 2TMB0598_R: AACCTGCTGCAAGCAAAGAG
Product Length200
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D09chromosomeD09:25953312..25953511 +
A09chromosomeA09:45400866..45401058 +
CM018223.1chromosomeCM018223.1:23837932..23838129 +
D5_09chromosomeD5_09:18661939..18662135 +
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:48491258..48491451 +
D10_09chromosomeD10_09:25424301..25424470 -
Dt_chr8chromosomeDt_chr8:33664467..33664666 +
D09chromosomeD09:24810005..24810204 +
A09chromosomeA09:40686374..40686566 +
Ghir_D09chromosomeGhir_D09:25861935..25862134 +
Ghir_A09chromosomeGhir_A09:45553773..45553965 +
D09chromosomeD09:25745487..25745686 +
A09chromosomeA09:47678751..47678943 +
D09chromosomeD09:25390348..25390547 +
A09chromosomeA09:46985127..46985319 +
D09chromosomeD09:23757900..23758099 +
A09chromosomeA09:43978396..43978588 +
At09chromosomeAt09:41680972..41681164 +
scaffold15708supercontigscaffold15708:53897..54089 +
scaffold12745supercontigscaffold12745:97583..97780 -
Gbar_D09chromosomeGbar_D09:24436903..24437100 +
Gbar_A09chromosomeGbar_A09:42547393..42547585 +
D09chromosomeD09:27310786..27310983 +
A09chromosomeA09:43678941..43679133 +
CM017631.1chromosomeCM017631.1:24838263..24838466 +
CM017618.1chromosomeCM017618.1:43040021..43040213 +
CM017657.1chromosomeCM017657.1:25898239..25898436 +
CM017644.1chromosomeCM017644.1:45723378..45723571 +
CM017709.1chromosomeCM017709.1:25316948..25317145 +
CM017696.1chromosomeCM017696.1:43481567..43481756 +
D09chromosomeD09:26778268..26778467 +
A09chromosomeA09:48031376..48031568 +
Chr09chromosomeChr09:46255228..46255419 +
Chr09chromosomeChr09:49511013..49511207 +
Chr09chromosomeChr09:23887654..23887851 +
B_09chromosomeB_09:36480990..36481177 +
Chr06chromosomeChr06:24860884..24861081 -
chr06chromosomechr06:17169017..17169203 -
Chr_06chromosomeChr_06:14909824..14909990 -
Chr06chromosomeChr06:25241763..25241957 +
Chr06chromosomeChr06:16147871..16148058 -
Chr06chromosomeChr06:11794222..11794422 -
Chr06chromosomeChr06:14524331..14524518 -
Chr09chromosomeChr09:69485060..69485252 +
Chr09chromosomeChr09:69542100..69542292 -
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679389.1BV679389.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Handan-208 x Pima-90, F2:3 (2007)AD_ch23_Dt.09N/A116.4TMHN07View
2Xinluzao-1 x Hai-7124, F2 (2008)AD_ch23_Dt.09N/A134.3TMHN07View
3AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A66tmb0598View
4AD-genome wide Reference Map (2009)AD_ch26_Dt.12N/A48tmb0598View
5TM-1 x 3-79, RIL (2012)AD_ch23_Dt.09N/A104.43tmb0598View
6TM-1 x 3-79, RIL (2014)AD_ch23_Dt.09N/A39.6tmb0598View
7TM-1 x Hai-7124, BC1 (2007)AD_ch23_Dt.09N/A54.2TMN07-200View
8TM-1 x Hai-7124, BC1 (2008)AD_ch23_Dt.09N/A54.29TMN07-200View
9TM-1 x Hai-7124, BC1 (2012)AD_ch23_Dt.09N/A51.7TMN07-200View
10Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch26_Dt.12N/A84.3TMN07-260View
11Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch26_Dt.12N/A93TMN07-320View
12Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch26_Dt.12N/A99.7TMN07-240View
1360182 x Jun Mian 1, F2:3 (2007)AD_ch23_Dt.09N/A35.6TMN07View
14TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch23_Dt.09N/A81.8TMN07View
15TM-1 x 3-79, RIL (2012.v3)AD_ch23_Dt.09N/A39.56TMB0598View
Sequence
>TMB0598 ID=TMB0598; Name=TMB0598; organism=Gossypium hirsutum; type=genetic_marker; length=200bp
TGAGCATATTCTTGCAAACGAGTTTTATGCAACAAGTGCTCTGGCAATCC
TAAACAAATCAATCAAATCCCACATCCATTACTAATAATATATTTTTTAT
TTACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACCTATGAAAATATT
GACAAACCTTTAGTCATGGTCATGCTTTTTCTCTTTGCTTGCAGCAGGTT