TMB0537, TMB0537 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0537
AliasTMI13
Genbank IDBV679384
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679384.1
Source Typegenomic
Repeat Motif(CA)8
PCR ConditionAnnealing temperature: 55
Primer 1TMB0537_F: ACCAGCCACTGAAAACCCTA
Primer 2TMB0537_R: TGAGCCAGACCAGACTTTTG
Product Length207
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679384
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:59446715..59446921 +
A12chromosomeA12:98976646..98976849 +
CM018226.1chromosomeCM018226.1:55832998..55833204 +
CM018213.1chromosomeCM018213.1:95492694..95492898 +
KI_12chromosomeKI_12:3308953..3309157 -
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:4096497..4096701 -
D10_12chromosomeD10_12:50827338..50827542 +
CM016625.1chromosomeCM016625.1:5098650..5098856 -
Dt_chr8chromosomeDt_chr8:52817454..52817660 +
At_chr12chromosomeAt_chr12:51045007..51045210 -
D12chromosomeD12:55994455..55994661 +
scaffold3404_A12supercontigscaffold3404_A12:296353..296556 -
Ghir_D12chromosomeGhir_D12:58383049..58383255 +
Ghir_A12chromosomeGhir_A12:103299335..103299538 +
D12chromosomeD12:57614277..57614483 +
A12chromosomeA12:103458358..103458561 +
D12chromosomeD12:58459532..58459738 +
A12chromosomeA12:101456527..101456730 +
D12chromosomeD12:56634127..56634333 +
A12chromosomeA12:98372585..98372788 +
scaffold6368supercontigscaffold6368:19147..19351 -
scaffold6368supercontigscaffold6368:20814..21018 -
scaffold12177supercontigscaffold12177:39680..39886 -
scaffold12177supercontigscaffold12177:36372..36576 -
Scaffold2535supercontigScaffold2535:50760..50964 +
Gbar_D12chromosomeGbar_D12:54916859..54917065 +
D12chromosomeD12:56753971..56754177 +
A12chromosomeA12:97549513..97549717 +
CM017634.1chromosomeCM017634.1:56637094..56637300 +
CM017621.1chromosomeCM017621.1:98700698..98700902 +
CM017660.1chromosomeCM017660.1:59572931..59573141 +
CM017647.1chromosomeCM017647.1:102492489..102492691 +
CM017712.1chromosomeCM017712.1:57242751..57242957 +
CM017699.1chromosomeCM017699.1:97918454..97918658 +
D12chromosomeD12:58864646..58864852 +
A12chromosomeA12:105018271..105018474 +
Chr12chromosomeChr12:106090374..106090578 +
Chr12chromosomeChr12:113154455..113154659 +
Chr12chromosomeChr12:53900135..53900337 +
B_12chromosomeB_12:87010873..87011083 -
Chr08chromosomeChr08:54283377..54283581 +
chr08chromosomechr08:42153766..42153968 +
Chr_08chromosomeChr_08:40108223..40108427 +
Chr08chromosomeChr08:55860108..55860312 +
Chr08chromosomeChr08:30571757..30571957 +
E12chromosomeE12:109610097..109610316 +
F12chromosomeF12:87574794..87575004 +
Chr12chromosomeChr12:168565552..168565766 +
Chr08chromosomeTMB0537:3..478 .
Chr08:53286494..53286966 +
Chr8chromosomeTMB0537:3..478 .
Chr8:8036278..8036748 -
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679384.1BV679384.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch12_At.12N/A107.81TMB0537View
2TM-1 x 3-79, RIL (2014)AD_ch12_At.12N/A107.8TMB0537View
30-153 x sGK9708, RIL (2016)AD_ch12_At.12N/A72.2TMB0537View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A128.4TMB0537View
50-153 x sGK9708, RIL (2017)AD_ch26_Dt.12N/A5.19TMB0537View
6TM-1 x 3-79, RIL (2012.v3)AD_ch12_At.12N/A107.81TMB0537View
Sequence
>TMB0537 ID=TMB0537; Name=TMB0537; organism=Gossypium hirsutum; type=genetic_marker; length=207bp
ACCAGCCACTGAAAACCCTATAAAAGTACACACACACACACACATATACT
GAATTCACATTTAGGTATGGTGTGTAGTAGGCTAGGTAGGATGGTCCAAG
ATTATTTGTTGGGAAAAGGGTCAAAAGGACCACTCTATAAAAACCTTAGG
GTTTTAAACGAGTTTCAAAAAGAAAAGGAACCAATCTCAAAAGTCTGGTC
TGGCTCA