TMB0403, TMB0403 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0403
AliasTMP01
Genbank IDBV679356
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679356.1
Source Typegenomic
Repeat Motif(TA)7+(CA)12
PCR ConditionAnnealing temperature: 55
Primer 1TMB0403_F: TAGACGTTCCAGTCCGTTCG
Primer 2TMB0403_R: TTGTACCTTGTCCCGGTCTC
Product Length195
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Germplasm
Stock NameType
TM-1breeding_germplasm
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679356
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
TMB0403_FTMB0403_FGossypium hirsutumprimer
TMB0403_RTMB0403_RGossypium hirsutumprimer


This genetic_marker is located in the following QTL feature(s):

Feature NameUnique NameSpeciesType
seed indexqSI.TTT-CSIL_ch13.df14.1Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
TMP01TMP01Gossypium hirsutummarker_locus
tmb0403tmb0403Gossypium hirsutummarker_locus
TMP01-200TMP01-200Gossypium hirsutummarker_locus
TMB0403/195y(C13)TMB0403/195y(C13)Gossypium hirsutummarker_locus
TMB0403TMB0403-64.907Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679356.1BV679356.1Gossypium hirsutumsequence_feature


Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Sequence
>TMB0403 ID=TMB0403|Name=TMB0403|organism=Gossypium hirsutum|type=genetic_marker|length=195bp
TAGACGTTCCAGTCCGTTCGTGTTAGTACGAGGTAAGTTTATAAGTAAAT
AAATGTTGTTAAATTGAAATGTATGTACATTATATGTGCTAAATTGAGTT
GTAAAGAAATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGACT
ATTGTAACACCCCTTACCCGTACTCGAGACCGGGACAAGGTACAA
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocus
1CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_A01N/AAD_chr.1387.4TMP01
2H18 x TM-1, F2 (2005)H18TM1-F2_chr13N/AAD_chr.1380.7TMP01
3TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr13N/AAD_chr.1356.5TMP01
4TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c13N/AAD_chr.1368.26tmb0403
5AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr13N/AAD_chr.13113tmb0403
6Yumian-1 x T586, RIL (2006)YT-RIL_chr13-2N/AAD_chr.1347.8tmb0403
7DH962 x Jinmian-6, F2 (2009)DJ-F2_chr13N/AAD_chr.1388.4tmb0403
8DH962 x Jinmian-6, F2 (2009)DJ-F2_chr13/LG10N/AAD_chr.1388.4tmb0403
9Yumian-1 x T586, RIL (2015)YT-RIL.15_chr13N/AAD_chr.1355.9tmb0403
10DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr13-1N/AAD_chr.1332.26tmb0403
11TM-1 x 3-79, RIL (2014)T3-RIL.14_chr13N/AAD_chr.1364.9tmb0403
12DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr13-1N/AAD_chr.13-116.4tmb0403
13TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr13/A13N/AAD_chr.1363.3TMP01-200
14Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_lgA01N/AAD_chr.1336.1TMP01-200
15TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr13N/AAD_chr.1363.2TMP01-200
16Yumian-1 x T586, RIL (2009)YT-RIL_chr13-2N/AAD_chr.1334.9TMB0403/195y(C13)
17TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.13N/AAD_chr.1364.91TMB0403