TMB0312, TMB0312 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	TMB0312
Alias	TMK12
Genbank ID	BV679337
Type	SSR
Species	Gossypium hirsutum
Germplasm	TM-1
Source Sequence	BV679337.1
Source Type	genomic
Repeat Motif	(CA)20
PCR Condition	Annealing temperature: 55
Primer 1	TMB0312_F: AGCTTTTCCATTCCAGAGCA
Primer 2	TMB0312_R: GGTTGTTGCAAGAGTTCACG
Product Length	207
Polymorphism	P_ TMB0312
Contact	Yu, John Z. (Zhi-Hong)
Comment	Primer data obtained in 2005-10

Contact

Name

Details

Yu, John Z. (Zhi-Hong)

Description:	Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:	John
Last name:	Yu
Title:	Research Geneticist
Institution:	USDA-ARS
Address:	2765 F&B Road, College Station, Texas 77845
Country:	United States
Email:	zyu@qutun.tamu.edu
Phone:	1-979-260-9237
Fax:	1-979-260-9333
Keywords:	Cotton Molecular Genetics
Last update:	6-Sep-2007

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	BV679337

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A13	chromosome	A13:93440940..93441144 +
CM018214.1	chromosome	CM018214.1:97452901..97453093 +
KI_13	chromosome	KI_13:36386071..36386241 -
Chr13_CRI-A2_v1.0.a1	chromosome	Chr13_CRI-A2_v1.0.a1:112027602..112027792 +
CM016626.1	chromosome	CM016626.1:142134351..142134522 -
A13	chromosome	A13:69835961..69836186 +
Ghir_A13	chromosome	Ghir_A13:97132203..97132395 +
Ghir_D13	chromosome	Ghir_D13:53603169..53603340 -
A13	chromosome	A13:99769657..99769863 +
A13	chromosome	A13:98021241..98021447 +
A13	chromosome	A13:96076851..96077057 +
At13	chromosome	At13:75797221..75797413 +
Dt13	chromosome	Dt13:52594212..52594383 -
scaffold11139	supercontig	scaffold11139:89744..89936 +
scaffold13076	supercontig	scaffold13076:52211..52382 -
Gbar_A13	chromosome	Gbar_A13:98389937..98390129 +
Gbar_D13	chromosome	Gbar_D13:50257562..50257733 -
A13	chromosome	A13:101814228..101814420 +
CM017622.1	chromosome	CM017622.1:99320875..99321067 +
CM017648.1	chromosome	CM017648.1:104436434..104436625 +
CM017700.1	chromosome	CM017700.1:99692931..99693123 +
A13	chromosome	A13:100426100..100426304 +
Chr13	chromosome	Chr13:105405409..105405598 +
Chr13	chromosome	Chr13:110243541..110243732 +
Chr13	chromosome	Chr13:34628725..34628897 -
Chr13	chromosome	Chr13:26982085..26982257 -
E10	chromosome	E10:29644..29818 +
E06	chromosome	E06:118486917..118487087 -
F13	chromosome	F13:85575591..85575771 -

Germplasm


Stock Name	Type
TM-1	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
BV679337.1	BV679337.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	7235 x TM-1, RIL (2007)	AD_ch23_Dt.09	N/A	32.7	TMK12b	View
2	7235 x TM-1, RIL (2007)	AD_ch23_Dt.09	N/A	46.3	TMK12a	View
3	TM-1 x 3-79, RIL (2012)	AD_ch13_At.13	N/A	89.82	tmb0312	View
4	AD-genome wide Reference Map (2009)	AD_ch13_At.13	N/A	50	tmb0312	View
5	Yumian-1 x T586, RIL (2006)	AD_ch13_At.13	N/A	13.2	tmb0312	View
6	Yumian-1 x T586, RIL (2015)	AD_ch13_At.13	N/A	123.4	tmb0312	View
7	TM-1 x 3-79, RIL (2014)	AD_ch13_At.13	N/A	86.3	tmb0312	View
8	Vsg x (TM-1 x Hai-7124), DH (2005)	AD_ch13_At.13	N/A	0	TMK12-210	View
9	Yumian-1 x T586, RIL (2009)	AD_ch13_At.13	N/A	13.2	TMB0312/190y	View
10	0-153 x sGK9708, RIL (2016)	AD_ch13_At.13	N/A	79.2	TMK12	View
11	0-153 x sGK9708, RIL (2017)	AD_ch13_At.13	N/A	16.58	TMK12	View
12	TM-1 x 3-79, RIL (2012.v3)	AD_ch13_At.13	N/A	86.29	TMB0312	View

Sequence

>TMB0312 ID=TMB0312; Name=TMB0312; organism=Gossypium hirsutum; type=genetic_marker; length=207bp
AGCTTTTCCATTCCAGAGCATTTTAAGCATCATAAGGGAAAAAACACACA
CACACACACACACACACACACACACACACACACATTATCATACAATTAAA
AGCATGATGGATTGCAAACTTCAGAAGACCCAATTTAGCAATATAGTCTT
CTTCATTTCTCAATATTCACTTACCAGCTGAGGTTCCCGTGAACTCTTGC
AACAACC

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TMB0312, TMB0312 (genetic_marker) Gossypium hirsutum