TMB0206, TMB0206 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0206
AliasTMG21
Genbank IDBV679315
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679315.1
Source Typegenomic
Repeat Motif(CA)10
PCR ConditionAnnealing temperature: 55
Primer 1TMB0206_F: ATGGTGACTGGGTGGGTATC
Primer 2TMB0206_R: GCGCAATTTCTCAAATCTGG
Product Length171
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D04chromosomeD04:54847742..54847912 +
D04chromosomeD04:54704169..54704353 +
CM018218.1chromosomeCM018218.1:52734613..52734783 +
CM018218.1chromosomeCM018218.1:52590030..52590225 +
D5_04chromosomeD5_04:1574980..1575174 -
D10_04chromosomeD10_04:51009628..51009794 +
D10_04chromosomeD10_04:50851772..50851958 +
Dt_chr12chromosomeDt_chr12:3590713..3590883 -
Dt_chr12chromosomeDt_chr12:3586035..3586205 -
D04chromosomeD04:49786539..49786709 +
D04chromosomeD04:49642876..49643060 +
Ghir_D04chromosomeGhir_D04:54643691..54643861 +
Ghir_D04chromosomeGhir_D04:54500844..54501028 +
D04chromosomeD04:55285438..55285608 +
D04chromosomeD04:55138341..55138525 +
D04chromosomeD04:54487255..54487423 +
D04chromosomeD04:54344137..54344321 +
D04chromosomeD04:52558457..52558627 +
scaffold12540supercontigscaffold12540:137157..137327 +
scaffold14038supercontigscaffold14038:46340..46537 -
Gbar_D04chromosomeGbar_D04:50831840..50832010 +
Gbar_D04chromosomeGbar_D04:50687285..50687482 +
D04chromosomeD04:55723759..55723929 +
D04chromosomeD04:55592043..55592227 +
CM017626.1chromosomeCM017626.1:52751771..52751941 +
CM017626.1chromosomeCM017626.1:52613931..52614109 +
CM017652.1chromosomeCM017652.1:55659100..55659268 +
CM017652.1chromosomeCM017652.1:55521667..55521851 +
CM017704.1chromosomeCM017704.1:52814414..52814602 +
D04chromosomeD04:56412306..56412476 +
D04chromosomeD04:56268731..56268915 +
Chr12chromosomeChr12:52786203..52786369 +
Chr12chromosomeChr12:52761451..52761625 +
Chr12chromosomeChr12:52648399..52648587 +
Chr12_3471194chromosomeChr12_3471194:4912..5076 +
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679315.1BV679315.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_chUN/A0TMG21View
2Yumian-1 x T586, RIL (2006)AD_ch04_At.04N/A31TMB0206View
3(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch04_At.04N/A21.7TMB0206View
4DH962 x Jinmian-6, F2 (2009)AD_chUN/A17.2TMB0206View
5Yumian-1 x T586, RIL (2015)AD_ch22_Dt.04N/A80.1TMB0206View
6DH962 X Ji Mian 5, F2 (2015)AD_ch22_Dt.04N/A38.73TMB0206View
7DH962 x Ji Mian 5, RIL (2015)AD_ch22_Dt.04N/A39.6TMB0206View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch22_Dt.04N/A18.4TMB0206View
9CCRI-35 x Yumian-1, RIL (2015)AD_ch22_Dt.04N/A21.5TMB0206View
10Yumian-1 x T586, RIL (2009)AD_ch04_At.04N/A5.8TMB0206/180yView
11CCRI-35 x Yumian-1, RIL (2017)AD_ch22_Dt.04N/A123.39TMB0206View
Sequence
>TMB0206 ID=TMB0206; Name=TMB0206; organism=Gossypium hirsutum; type=genetic_marker; length=171bp
ATGGTGACTGGGTGGGTATCAACTGACATACATATATATAGACCCACACA
CACACACACACACAAAAGAGATGCATGTTTCACGTATGATTCCGTGTTGG
GTTTACAGGATTAGGATTACCCTGTTACTAGTCATGTTTATATTAACGTT
TCCAGATTTGAGAAATTGCGC