STV0161, STV0161 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSTV0161
AliasSTV161
STV_Contig_6611a
Genbank IDDN803271
TypeSSR
SpeciesGossypium hirsutum
GermplasmCoker 312
Source SequenceSTV_Contig_6611
Source TypeEST
Repeat MotifAAAT
Primer 1STV161_F: ATAGTTTTGGGGATTTTGGGTCTG
Primer 2STV161_R: TCTCATCCTCATTGATTCCATCTG
PolymorphismP_ STV0161
Publication[view all]
ContactScheffler, Jodi A.
CommentPrimer data obtained in 2006
Contact
NameDetails
Scheffler, Jodi A.
First name:Jodi
Last name:Scheffler
Title:Research Geneticist
Institution:USDA-ARS
Address:141 Experiment Station Road, Stoneville, Mississippi 38776
Country:United States
Email:jodi.Scheffler@usda.gov
Phone:+001 662 686-5219
Keywords:Cotton Geneticist
Last update:20-Feb-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDN803271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:30409421..30409562 +
A08chromosomeA08:67439124..67439262 -
CM018222.1chromosomeCM018222.1:29364150..29364291 +
CM018209.1chromosomeCM018209.1:55268511..55268649 +
D5_08chromosomeD5_08:26555311..26555453 +
KI_08chromosomeKI_08:9832080..9832222 -
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:56318988..56319126 -
D10_08chromosomeD10_08:32433015..32433157 -
CM016621.1chromosomeCM016621.1:81632295..81632433 +
At_chr11chromosomeAt_chr11:76612636..76612774 +
Dt_chr4chromosomeDt_chr4:473578..473719 -
At_chr4chromosomeAt_chr4:57164240..57164378 -
D08chromosomeD08:28540971..28541112 +
scaffold2089_A08supercontigscaffold2089_A08:54586..54724 -
Ghir_D08chromosomeGhir_D08:31053325..31053466 +
Ghir_A08chromosomeGhir_A08:58569666..58569804 +
D08chromosomeD08:31484782..31484923 +
A08chromosomeA08:60496407..60496545 +
A08chromosomeA08:59974959..59975097 +
D08chromosomeD08:29086330..29086471 +
A08chromosomeA08:57974098..57974236 +
scaffold7429supercontigscaffold7429:72882..73023 -
scaffold1887supercontigscaffold1887:218732..218870 -
Gbar_D08chromosomeGbar_D08:29248721..29248862 +
Gbar_A08chromosomeGbar_A08:56564558..56564696 +
D08chromosomeD08:30290254..30290395 +
A08chromosomeA08:56563624..56563762 +
CM017630.1chromosomeCM017630.1:30091535..30091676 +
CM017617.1chromosomeCM017617.1:57344117..57344255 +
CM017656.1chromosomeCM017656.1:31308984..31309125 +
CM017643.1chromosomeCM017643.1:63091681..63091819 +
CM017708.1chromosomeCM017708.1:29425852..29425993 +
CM017695.1chromosomeCM017695.1:56770353..56770491 +
D08chromosomeD08:31005012..31005153 +
A08chromosomeA08:61130140..61130278 +
Chr08chromosomeChr08:62643428..62643566 +
Chr08chromosomeChr08:53565198..53565336 +
Chr08chromosomeChr08:27170691..27170833 +
B_08chromosomeB_08:43306908..43307046 +
Chr04chromosomeChr04:27797174..27797316 +
chr04chromosomechr04:21169469..21169611 +
Chr_04chromosomeChr_04:19057903..19058045 +
Chr04chromosomeChr04:29632865..29633007 +
Chr04chromosomeChr04:18551951..18552091 +
Chr04chromosomeChr04:15264211..15264357 +
Chr04chromosomeChr04:18472678..18472819 +
E08chromosomeE08:50676341..50676482 -
F08chromosomeF08:43158874..43159012 -
Germplasm
Stock NameType
Coker 312accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
STV_Contig_6611STV_Contig_6611Gossypium hirsutumsequence_feature


Sequence
>STV0161 ID=STV0161; Name=STV0161; organism=Gossypium hirsutum; type=genetic_marker; length=142bp
ATAGTTTTGGGGATTTTGGGTCTGTCTCAAATAAATAAATAAATGAAATC
TGAGATTTTGGTTGGTGTCTTCTAGTTGTATGAAATGGAGTTCGATAACA
TTGAGTATGTGTCAACTACAGATGGAATCAATGAGGATGAGA