STV0083, STV0083 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSTV0083
AliasSTV083
STV_Contig_3617a
Genbank IDDT050645
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Source SequenceSTV_Contig_3617
Source TypeEST
Repeat MotifCAT
Primer 1STV083_F: CTGCTCAACCTACAGATTCCTGGT
Primer 2STV083_R: ACAAAGTCAAGGTCAACGGCTATC
PolymorphismP_ STV0083
Publication[view all]
ContactScheffler, Jodi A.
CommentPrimer data obtained in 2006
Contact
NameDetails
Scheffler, Jodi A.
First name:Jodi
Last name:Scheffler
Title:Research Geneticist
Institution:USDA-ARS
Address:141 Experiment Station Road, Stoneville, Mississippi 38776
Country:United States
Email:jodi.Scheffler@usda.gov
Phone:+001 662 686-5219
Keywords:Cotton Geneticist
Last update:20-Feb-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT050645
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:59732403..59732515 +
A04chromosomeA04:4636191..4636303 -
CM018219.1chromosomeCM018219.1:58718312..58718424 +
CM018205.1chromosomeCM018205.1:4630353..4630465 -
D5_05chromosomeD5_05:53697611..53697722 -
KI_05chromosomeKI_05:47149043..47149155 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:92118819..92118931 -
D10_05chromosomeD10_05:5969069..5969181 +
CM016618.1chromosomeCM016618.1:5583564..5583676 -
At_chr12chromosomeAt_chr12:42349317..42349429 +
Dt_chr9chromosomeDt_chr9:3899457..3899569 -
D05chromosomeD05:57420984..57421096 +
A04chromosomeA04:4228538..4228650 -
Ghir_D05chromosomeGhir_D05:58659567..58659679 +
Ghir_A04chromosomeGhir_A04:5276492..5276604 -
D05chromosomeD05:59433218..59433330 +
A04chromosomeA04:4471896..4472008 -
D05chromosomeD05:59339328..59339440 +
scaffold14903supercontigscaffold14903:21781..21893 +
scaffold10447supercontigscaffold10447:180334..180446 -
Gbar_D05chromosomeGbar_D05:60060158..60060270 +
Gbar_A04chromosomeGbar_A04:4841559..4841671 -
D05chromosomeD05:61554978..61555090 +
A04chromosomeA04:4694335..4694447 -
CM017627.1chromosomeCM017627.1:58376310..58376422 +
CM017613.1chromosomeCM017613.1:5020911..5021023 -
CM017653.1chromosomeCM017653.1:60893559..60893671 +
CM017639.1chromosomeCM017639.1:5295656..5295768 -
CM017705.1chromosomeCM017705.1:59636075..59636187 +
CM017691.1chromosomeCM017691.1:4740810..4740922 -
D05chromosomeD05:61744332..61744444 +
A04chromosomeA04:4786339..4786451 -
Chr05chromosomeChr05:89174286..89174398 +
Chr05chromosomeChr05:92669833..92669945 +
Chr05chromosomeChr05:53752092..53752204 +
B_05chromosomeB_05:7277759..7277871 +
Chr09chromosomeChr09:53865034..53865146 +
chr09chromosomechr09:52062767..52062879 -
Chr_09chromosomeChr_09:50057754..50057866 -
Chr09chromosomeChr09:57994371..57994483 +
Chr09chromosomeChr09:48312592..48312704 -
Chr09chromosomeChr09:40551108..40551220 -
Chr09chromosomeChr09:50445857..50445969 -
E05chromosomeE05:98497094..98497206 +
F05chromosomeF05:72058938..72059050 +
Chr05chromosomeChr05:15362745..15362857 -
Germplasm
Stock NameType
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
STV_Contig_3617STV_Contig_3617Gossypium hirsutumsequence_feature


Sequence
>STV0083 ID=STV0083; Name=STV0083; organism=Gossypium hirsutum; type=genetic_marker; length=114bp
CTGCTCAACCTACAGATTCCTGGTGATTGTGGCTGATGCATCATCATCAT
TGGTGATCGTGTGCTTCTGAAGCCTTTTTAAGTAACTGATGATAGCCGTT
GACCTTGACTTTGT