STV0045, STV0045 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSTV0045
AliasSTV045
STV_Contig_1847a
Genbank IDDN804301
TypeSSR
SpeciesGossypium hirsutum
GermplasmCoker 312
Source SequenceSTV_Contig_1847
Source TypeEST
Repeat MotifTTC
Primer 1STV045_F: CCCCACACACCATTTATCAAATCT
Primer 2STV045_R: GAAAACGATGATGTTCCATGTTGA
Publication[view all]
ContactScheffler, Jodi A.
CommentPrimer data obtained in 2006
Contact
NameDetails
Scheffler, Jodi A.
First name:Jodi
Last name:Scheffler
Title:Research Geneticist
Institution:USDA-ARS
Address:141 Experiment Station Road, Stoneville, Mississippi 38776
Country:United States
Email:jodi.Scheffler@usda.gov
Phone:+001 662 686-5219
Keywords:Cotton Geneticist
Last update:20-Feb-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDN804301
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:65653357..65653497 -
A06chromosomeA06:119070650..119070790 -
CM018220.1chromosomeCM018220.1:60500198..60500338 -
CM018207.1chromosomeCM018207.1:113847637..113847777 -
D5_06chromosomeD5_06:58675336..58675484 -
KI_06chromosomeKI_06:51622092..51622228 +
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:128908806..128908946 -
D10_06chromosomeD10_06:2302121..2302261 +
CM016619.1chromosomeCM016619.1:3218613..3218753 +
scaffold1852.1supercontigscaffold1852.1:149863..150003 -
D06chromosomeD06:61585416..61585556 -
A06chromosomeA06:101221513..101221653 -
Ghir_D06chromosomeGhir_D06:64310152..64310292 -
Ghir_A06chromosomeGhir_A06:121642253..121642393 -
D06chromosomeD06:63032839..63032979 -
A06chromosomeA06:124161701..124161841 -
D06chromosomeD06:63677894..63678034 -
A06chromosomeA06:123702276..123702416 -
D06chromosomeD06:60764278..60764418 -
A06chromosomeA06:119515400..119515537 -
scaffold3302supercontigscaffold3302:159825..159965 -
Gbar_D06chromosomeGbar_D06:60716443..60716583 -
Gbar_A06chromosomeGbar_A06:112846603..112846743 -
D06chromosomeD06:60554244..60554384 -
A06chromosomeA06:115913506..115913646 -
CM017628.1chromosomeCM017628.1:60919711..60919851 -
CM017615.1chromosomeCM017615.1:119217395..119217535 -
CM017654.1chromosomeCM017654.1:64512554..64512694 -
CM017641.1chromosomeCM017641.1:124537306..124537446 -
CM017706.1chromosomeCM017706.1:61087296..61087436 -
CM017693.1chromosomeCM017693.1:117139593..117139733 -
D06chromosomeD06:64145011..64145151 -
A06chromosomeA06:125802054..125802194 -
Chr06chromosomeChr06:126392132..126392272 -
Chr06chromosomeChr06:128622817..128622957 -
Chr06chromosomeChr06:58318784..58318932 -
B_06chromosomeB_06:2063481..2063617 -
Chr10chromosomeChr10:60881174..60881314 -
chr10chromosomechr10:46847470..46847610 -
Chr_10chromosomeChr_10:41674107..41674247 -
Chr10chromosomeChr10:62539717..62539857 -
Chr10chromosomeChr10:39785955..39786095 -
Chr10chromosomeChr10:34143383..34143527 -
Chr10chromosomeChr10:41336607..41336747 -
E06chromosomeE06:2993057..2993197 +
F06chromosomeF06:95772690..95772830 -
Chr06chromosomeChr06:3087395..3087535 +
Germplasm
Stock NameType
Coker 312accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
STV_Contig_1847STV_Contig_1847Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch06_At.06N/A21.8STV045View
2Yumian-1 x 7235, RIL (2015)AD_ch06_At.06N/A0STV045View
3DH962 X Ji Mian 5, F2 (2015)AD_ch06_At.06N/A58.04STV045View
4DH962 x Ji Mian 5, RIL (2015)AD_ch06_At.06N/A0STV045View
5DH962 x Jinmian-6, F2 (2009)AD_ch06_At.06N/A45.3STV45View
6DH962 x Jinmian-6, F2 (2009)AD_ch06_At.06N/A45.3STV45View
Sequence
>STV0045 ID=STV0045; Name=STV0045; organism=Gossypium hirsutum; type=genetic_marker; length=138bp
CCCCACACACCATTTATCAAATCTCTGTTACAGTTCTTTCTTTCTTTCTT
TTGCTTTGATATTTCGTATAACAACATGAAAAATCTGGGTTTAATCTTGT
ATTGTTCTTCATGTTCAACATGGAACATCATCGTTTTC