STV0034, STV0034 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSTV0034
AliasSTV034
STV_Contig_1413a
Genbank IDDN758614
TypeSSR
SpeciesGossypium hirsutum
GermplasmDES 119
Source SequenceSTV_Contig_1413
Source TypeEST
Repeat MotifGGA
Primer 1STV034_F: GTGATGGTGAAGATAGTGGTGCTG
Primer 2STV034_R: GTGCTATCACTCTCAAAGAACCCC
PolymorphismP_ STV0034
Publication[view all]
ContactScheffler, Jodi A.
CommentPrimer data obtained in 2006
Contact
NameDetails
Scheffler, Jodi A.
First name:Jodi
Last name:Scheffler
Title:Research Geneticist
Institution:USDA-ARS
Address:141 Experiment Station Road, Stoneville, Mississippi 38776
Country:United States
Email:jodi.Scheffler@usda.gov
Phone:+001 662 686-5219
Keywords:Cotton Geneticist
Last update:20-Feb-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDN758614
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:35399364..35399504 +
A06chromosomeA06:61714464..61714608 +
CM018220.1chromosomeCM018220.1:32286708..32286855 +
CM018207.1chromosomeCM018207.1:56389753..56389897 +
D5_06chromosomeD5_06:31920400..31920547 +
KI_06chromosomeKI_06:19770299..19770604 +
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:61424350..61424494 +
D10_06chromosomeD10_06:30298515..30298661 -
CM016619.1chromosomeCM016619.1:64844470..64844614 +
Dt_chr10chromosomeDt_chr10:35547155..35547295 +
At_chr10chromosomeAt_chr10:19279239..19279383 -
D06chromosomeD06:33504343..33504483 +
A06chromosomeA06:55250471..55250615 +
Ghir_D06chromosomeGhir_D06:33702887..33703027 +
Ghir_A06chromosomeGhir_A06:60115289..60115433 -
D06chromosomeD06:33019441..33019581 +
A06chromosomeA06:61152554..61152698 -
D06chromosomeD06:33515245..33515384 +
A06chromosomeA06:60255484..60255628 -
D06chromosomeD06:32756586..32756726 +
A06chromosomeA06:58249246..58249390 -
Dt06chromosomeDt06:32948184..32948331 +
scaffold4237supercontigscaffold4237:152887..153034 +
scaffold4749supercontigscaffold4749:102669..102813 -
Gbar_D06chromosomeGbar_D06:32439892..32440039 +
Gbar_A06chromosomeGbar_A06:56474027..56474171 +
D06chromosomeD06:32137346..32137493 +
A06chromosomeA06:57601460..57601604 -
CM017628.1chromosomeCM017628.1:33101154..33101301 +
CM017615.1chromosomeCM017615.1:59093695..59093839 +
CM017654.1chromosomeCM017654.1:33443498..33443645 +
CM017641.1chromosomeCM017641.1:61738340..61738484 +
CM017706.1chromosomeCM017706.1:32469224..32469371 +
CM017693.1chromosomeCM017693.1:57639067..57639211 +
D06chromosomeD06:33927762..33927902 +
A06chromosomeA06:61195799..61195943 +
Chr06chromosomeChr06:62366767..62366911 +
Chr06chromosomeChr06:63796823..63796967 +
Chr06chromosomeChr06:31719504..31719651 +
B_06chromosomeB_06:47831110..47831254 -
Chr10chromosomeChr10:32634011..32634157 +
chr10chromosomechr10:25865842..25865986 +
Chr10chromosomeChr10:22093999..22094145 +
Chr10chromosomeChr10:18673115..18673259 +
E06chromosomeE06:58727535..58727677 -
F06chromosomeF06:47855516..47855660 +
Germplasm
Stock NameType
DES 119accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
STV_Contig_1413STV_Contig_1413Gossypium hirsutumsequence_feature


Sequence
>STV0034 ID=STV0034; Name=STV0034; organism=Gossypium hirsutum; type=genetic_marker; length=145bp
GTGATGGTGAAGATAGTGGTGCTGTGATGCAAACACTGGTTATGGGCGGT
GGAGAAGAAAATGGTGGTGGTAAAATCTGTGGAGGAGGAGGATCAGGGGG
CGGCGTTGGTGGTGTCGGGTCGGGGTTCTTTGAGAGTGATAGCAC