STV0004, STV0004 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSTV0004
AliasSTV004
STV_Contig_10102a
Genbank IDDT047567
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Source SequenceSTV_Contig_10102
Source TypeEST
Repeat MotifTCCGAG
Primer 1STV004_F: CTCATCTAGAAACTCGAGCGAAGC
Primer 2STV004_R: TAGCTCAGAATGTAGCCGAGAAGG
PolymorphismP_ STV0004
Publication[view all]
ContactScheffler, Jodi A.
CommentPrimer data obtained in 2006
Contact
NameDetails
Scheffler, Jodi A.
First name:Jodi
Last name:Scheffler
Title:Research Geneticist
Institution:USDA-ARS
Address:141 Experiment Station Road, Stoneville, Mississippi 38776
Country:United States
Email:jodi.Scheffler@usda.gov
Phone:+001 662 686-5219
Keywords:Cotton Geneticist
Last update:20-Feb-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT047567
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:25267662..25268027 -
A07chromosomeA07:33406883..33407249 -
CM018221.1chromosomeCM018221.1:24426857..24427228 -
CM018208.1chromosomeCM018208.1:32893567..32893933 -
D5_07chromosomeD5_07:22778430..22778793 -
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:33000798..33001164 -
D10_07chromosomeD10_07:30411357..30411734 +
At_chr7chromosomeAt_chr7:28083342..28083708 +
Dt_chr1chromosomeDt_chr1:58561557..58561922 -
scaffold129701supercontigscaffold129701:40..406 -
D07chromosomeD07:24282499..24282864 -
A07chromosomeA07:32808952..32809318 -
Ghir_D07chromosomeGhir_D07:24759106..24759471 -
Ghir_A07chromosomeGhir_A07:33665364..33665730 -
D07chromosomeD07:24127783..24128148 -
A07chromosomeA07:32440322..32440688 -
D07chromosomeD07:24791070..24791435 -
A07chromosomeA07:33664212..33664578 -
D07chromosomeD07:24214133..24214498 -
A07chromosomeA07:33022040..33022406 -
Dt07chromosomeDt07:27765532..27765903 -
Dt07chromosomeDt07:27762149..27762514 -
At07chromosomeAt07:37133399..37133765 -
At07chromosomeAt07:37129777..37130142 -
scaffold1687supercontigscaffold1687:273363..273729 -
scaffold1687supercontigscaffold1687:269741..270106 -
scaffold13970supercontigscaffold13970:161801..162172 -
scaffold13970supercontigscaffold13970:158418..158783 -
Gbar_D07chromosomeGbar_D07:24648773..24649144 -
Gbar_A07chromosomeGbar_A07:32909238..32909604 -
D07chromosomeD07:24501019..24501390 -
A07chromosomeA07:32797086..32797452 -
CM017629.1chromosomeCM017629.1:24774112..24774483 -
CM017616.1chromosomeCM017616.1:32998972..32999338 -
CM017655.1chromosomeCM017655.1:25027865..25028236 -
CM017642.1chromosomeCM017642.1:33392427..33392793 -
CM017707.1chromosomeCM017707.1:24816384..24816755 -
CM017694.1chromosomeCM017694.1:33156871..33157237 -
D07chromosomeD07:25066395..25066760 -
A07chromosomeA07:33972332..33972698 -
Chr07chromosomeChr07:34744869..34745235 -
Chr07chromosomeChr07:35384152..35384518 -
Chr07chromosomeChr07:29470023..29470386 +
Chr01chromosomeChr01:24687134..24687511 -
chr01chromosomechr01:21145653..21146029 -
Chr01chromosomeChr01:24109989..24110360 -
Chr01chromosomeChr01:19696250..19696621 -
Chr01chromosomeChr01:16069998..16070369 -
Chr01chromosomeChr01:19359470..19359835 -
F07chromosomeF07:30557995..30558371 -
Chr07chromosomeChr07:92299270..92299650 -
Germplasm
Stock NameType
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
STV_Contig_10102STV_Contig_10102Gossypium hirsutumsequence_feature


Sequence
>STV0004 ID=STV0004; Name=STV0004; organism=Gossypium hirsutum; type=genetic_marker; length=113bp
CTCATCTAGAAACTCGAGCGAAGCAATGGGAGGCAACTCGAATGTTGAAT
CGCTTGAATCCGAGTCCGAGTCCGAGTCCGAGTCCTTGTCCTTCTCGGCT
ACATTCTGAGCTA