SHIN-1584, SHIN-1584 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSHIN-1584
Genbank IDDT566665
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceDT566665.1
Source TypeEST
Primer 1SHIN-1584_F: CCTTCGTCCTCCTCTTCCTT
Primer 2SHIN-1584_R: TCGTCGTCGTTGTCTTCTTG
Restriction EnzymeEcoRI; NotI
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT566665
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:4149448..4149606 +
A02chromosomeA02:85813719..85813901 -
CM018217.1chromosomeCM018217.1:3907056..3907214 +
CM018203.1chromosomeCM018203.1:95608362..95608544 -
D5_02chromosomeD5_02:3911293..3911451 +
KI_06chromosomeKI_06:43426710..43426868 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:4086550..4086732 +
D10_02chromosomeD10_02:3808082..3808240 +
CM016615.1chromosomeCM016615.1:5480402..5480560 +
Dt_chr3chromosomeDt_chr3:25496170..25496328 -
D03chromosomeD03:3882197..3882355 +
A02chromosomeA02:79168032..79168214 -
Ghir_D03chromosomeGhir_D03:3932727..3932885 +
Ghir_A02chromosomeGhir_A02:103619866..103620048 -
D03chromosomeD03:3867909..3868067 +
A02chromosomeA02:103902163..103902345 -
D03chromosomeD03:3964811..3964969 +
A02chromosomeA02:101254007..101254177 -
A02chromosomeA02:99879048..99879218 -
scaffold12649supercontigscaffold12649:193052..193234 +
scaffold6998supercontigscaffold6998:70186..70368 -
scaffold6998supercontigscaffold6998:77110..77268 -
Gbar_D03chromosomeGbar_D03:3867195..3867353 +
Gbar_A02chromosomeGbar_A02:95756228..95756410 -
D03chromosomeD03:3907251..3907409 +
A02chromosomeA02:97810511..97810693 -
CM017625.1chromosomeCM017625.1:3860794..3860952 +
CM017611.1chromosomeCM017611.1:100564027..100564209 -
CM017651.1chromosomeCM017651.1:4022459..4022617 +
CM017637.1chromosomeCM017637.1:105400036..105400218 -
CM017703.1chromosomeCM017703.1:3946900..3947058 +
CM017689.1chromosomeCM017689.1:97936805..97936987 -
D03chromosomeD03:4069358..4069516 +
A02chromosomeA02:103699627..103699809 -
Chr02chromosomeChr02:88101197..88101367 -
Chr02chromosomeChr02:97641111..97641293 -
Chr02chromosomeChr02:3788879..3789037 +
B_04chromosomeB_04:69476505..69476669 -
Chr03chromosomeChr03:3793109..3793267 +
chr03chromosomechr03:3536859..3537161 +
Chr_03chromosomeChr_03:2803008..2803166 +
Chr03chromosomeChr03:4018932..4019090 +
Chr03chromosomeChr03:2893935..2894099 +
Chr03chromosomeChr03:2620213..2620371 +
E02chromosomeE02:5412286..5412444 +
F02chromosomeF02:3916468..3916626 +
Chr02chromosomeChr02:133952945..133953103 -
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT566665.1DT566665.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch02_At.02N/A15.2MON_SHIN1584View
2Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A98.1SHIN1584View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A110.9SHIN1584View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A38.2SHIN1584View
5LMY22 x LY343, RIL (2020)A02N/A156.99SHIN1584View
6CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A80.54SHIN1584View
7MGG-293-793, MAGIC (2018)AD_ch02_At.02N/A101.6SHIN1584View
8LMY22 x LY343, RIL (2016)chr.2N/A3.8SHIN-1584View
Sequence
>SHIN-1584 ID=SHIN-1584; Name=SHIN-1584; organism=Gossypium hirsutum; type=genetic_marker; length=183bp
CCTTCGTCCTCCTCTTCCTTTCTCCCCACCCACTCCTCAGATCACTCTCC
TCCCTTCCTCCGCCACCGCCACCGCCACCGCCACCGCCACGGGCACCAAC
ACCACAACTCCTTCTCAGCCTCGTATCGTCGCCGAGAAAAAAGAAGGCAA
TGTCGGCGAAGAACAAGAAGACAACGACGACGA