SHIN-1421, SHIN-1421 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSHIN-1421
Genbank IDDT463724
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta
Source SequenceDT463724.1
Source TypeEST
Primer 1SHIN-1421_F: GGCAAGAACAAAGGGACTGA
Primer 2SHIN-1421_R: GGTGATCCACTGCTAGCTCC
Restriction EnzymeEcoRI; EcoRI
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT463724
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D10chromosomeD10:67851141..67851340 +
A10chromosomeA10:111678685..111678878 +
CM018224.1chromosomeCM018224.1:64803198..64803397 +
CM018211.1chromosomeCM018211.1:109600205..109600398 +
D5_10chromosomeD5_10:215312..215504 -
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:1045832..1046025 +
D10_10chromosomeD10_10:166869..167062 -
CM016623.1chromosomeCM016623.1:145756435..145756628 +
scaffold613.1supercontigscaffold613.1:761567..761766 +
scaffold1551.1supercontigscaffold1551.1:213296..213489 -
D10chromosomeD10:63257302..63257501 +
A10chromosomeA10:100583008..100583201 +
Ghir_D10chromosomeGhir_D10:67564822..67565021 +
Ghir_A10chromosomeGhir_A10:114535690..114535883 +
D10chromosomeD10:66678423..66678622 +
A10chromosomeA10:114827201..114827394 +
A10chromosomeA10:114638548..114638741 +
D10chromosomeD10:63981251..63981447 +
A10chromosomeA10:109124226..109124419 +
scaffold14466supercontigscaffold14466:82253..82446 -
scaffold14466supercontigscaffold14466:79557..79750 -
scaffold11534supercontigscaffold11534:38582..38781 -
Gbar_D10chromosomeGbar_D10:65445221..65445420 +
Gbar_A10chromosomeGbar_A10:110023160..110023353 +
D10chromosomeD10:66568669..66568868 +
A10chromosomeA10:111430714..111430907 +
CM017632.1chromosomeCM017632.1:65388592..65388785 +
CM017619.1chromosomeCM017619.1:110667566..110667759 +
CM017658.1chromosomeCM017658.1:67483473..67483669 +
CM017645.1chromosomeCM017645.1:118290216..118290409 +
CM017710.1chromosomeCM017710.1:65645377..65645573 +
CM017697.1chromosomeCM017697.1:112904734..112904927 +
D10chromosomeD10:67863163..67863362 +
A10chromosomeA10:117909203..117909396 +
Chr10chromosomeChr10:128020364..128020557 +
Chr10chromosomeChr10:123760116..123760309 +
Chr10chromosomeChr10:61720692..61720885 +
B_10chromosomeB_10:295881..296074 -
Chr11chromosomeChr11:63993833..63994026 +
chr11chromosomechr11:52681439..52682199 +
Chr_11chromosomeChr_11:43607087..43607280 +
Chr11chromosomeChr11:65536094..65536287 +
Chr11chromosomeChr11:49211518..49211711 +
Chr11chromosomeChr11:35937520..35937713 +
Chr11chromosomeChr11:48684668..48684861 +
E10chromosomeE10:613740..613936 +
E10chromosomeE10:699706..699902 -
E10chromosomeE10:599400..599596 -
F10chromosomeF10:94698456..94698649 +
Chr10chromosomeChr10:3163049..3163248 +
Chr10chromosomeChr10:3092185..3092382 +
Chr10chromosomeChr10:3129671..3129870 +
Chr10chromosomeChr10:3225388..3225581 +
Chr06chromosomeChr06:18406843..18407036 +
Chr11chromosomeSHIN-1421:15..821 .
Chr11:62471842..62472642 +
Chr11chromosomeSHIN-1421:15..821 .
Chr11:46646976..46647776 -
Germplasm
Stock NameType
Deltaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT463724.1DT463724.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch20_Dt.10N/A27.7SHIN-1421View
20-153 x sGK9708, RIL (2016)AD_ch10_At.10N/A9SHIN-1421View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch20_Dt.10N/A4.8SHIN1421View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch20_Dt.10N/A33.7SHIN1421View
5CCRI-35 x Yumian-1, RIL (2017)AD_ch20_Dt.10N/A132.34SHIN1421View
Sequence
>SHIN-1421 ID=SHIN-1421; Name=SHIN-1421; organism=Gossypium hirsutum; type=genetic_marker; length=200bp
GGCAAGAACAAAGGGACTGATTTGAAGAAAAAAATGAACAAGTGCAGATC
AATCAAGTTATCAGATATGAAGGAGGGCCTAAGATCATCATCACCTTTGG
TTTCAAGGAAAACTATTTCTCCGCCTGTTAAACCACCACCACCACCACCA
CCTCACAACAACAGCAGGTCTATCATCAAAGGAGCTAGCAGTGGATCACC