SHIN-0613, SHIN-0613 (genetic_marker) Gossypium raimondii

Marker Overview
NameSHIN-0613
Genbank IDCA993455
TypeSSR
SpeciesGossypium raimondii
GermplasmT-25
Source TypeEST
Primer 1SHIN-0613_F: TAACGAGGGAATTGACCCAC
Primer 2SHIN-0613_R: CCAAGCTTCCTTCGGGTT
Restriction EnzymeEcoRI; XhoI
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D10chromosomeD10:67407699..67407796 -
A10chromosomeA10:111209648..111209745 -
CM018224.1chromosomeCM018224.1:64399683..64399780 -
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:664871..664974 -
scaffold613.1supercontigscaffold613.1:327170..327267 -
scaffold160442supercontigscaffold160442:124..221 +
scaffold4395_D10supercontigscaffold4395_D10:135296..135393 -
A10chromosomeA10:100152275..100152372 -
Ghir_D10chromosomeGhir_D10:67123849..67123946 -
Ghir_A10chromosomeGhir_A10:114051620..114051717 -
D10chromosomeD10:66251052..66251149 -
A10chromosomeA10:114401457..114401554 -
D10chromosomeD10:65302343..65302440 -
A10chromosomeA10:114172620..114172717 -
D10chromosomeD10:63553213..63553310 -
A10chromosomeA10:108680697..108680788 -
scaffold5826supercontigscaffold5826:214330..214415 +
scaffold11534supercontigscaffold11534:592190..592287 +
scaffold11534supercontigscaffold11534:596427..596512 +
Gbar_D10chromosomeGbar_D10:65041790..65041887 -
Gbar_A10chromosomeGbar_A10:109574506..109574591 -
D10chromosomeD10:66180874..66180971 -
CM017632.1chromosomeCM017632.1:64953328..64953425 -
CM017619.1chromosomeCM017619.1:110239551..110239642 -
CM017658.1chromosomeCM017658.1:67048934..67049031 -
CM017645.1chromosomeCM017645.1:117879008..117879105 -
CM017710.1chromosomeCM017710.1:65233971..65234068 -
D10chromosomeD10:67432263..67432360 -
A10chromosomeA10:117393032..117393129 -
Chr10chromosomeChr10:127652664..127652761 -
Chr10chromosomeChr10:123379108..123379211 -
B_10chromosomeB_10:555473..555570 -
E10chromosomeE10:1223067..1223164 +
F10chromosomeF10:94337077..94337174 -
Chr10chromosomeChr10:2638160..2638257 -
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_chUN/A8.6MON_SHIN0613View
2Yumian-1 x T586, RIL (2015)AD_ch10_At.10N/A116.3SHIN0613View
3Yumian-1 x 7235, RIL (2015)AD_ch10_At.10N/A102SHIN0613View
4DH962 X Ji Mian 5, F2 (2015)AD_ch10_At.10N/A58.23MON_SHIN-0613View
5DH962 x Ji Mian 5, RIL (2015)AD_ch10_At.10N/A6.5MON_SHIN-0613View
6W10 x TM-1, F2:3 (2015)AD_ch10_At.10N/A7.9SHIN-0613View
7LMY22 x LY343, RIL (2016)chr.10N/A35SHIN-0613View
Sequence
>SHIN-0613 ID=SHIN-0613; Name=SHIN-0613; organism=Gossypium raimondii; type=genetic_marker; length=101bp
TAACGAGGGAATTGACCCACGAAACGTTTGGCTCATCGATGTTGGATGGG
GTTGGGGTTGGGGTTGGGGTTGGGGTGTTACGGAACCCGAAGGAAGCTTG
G