SHIN-0607, SHIN-0607 (genetic_marker) Gossypium raimondii

Marker Overview
NameSHIN-0607
Genbank IDCA992926
TypeSSR
SpeciesGossypium raimondii
GermplasmT-25
Source TypeEST
Primer 1SHIN-0607_F: CTTCTGCACCAGCTCCTTCT
Primer 2SHIN-0607_R: TACTGAAATGGCAGCCAACA
Restriction EnzymeEcoRI; XhoI
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA992926
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:41357948..41358070 -
A12chromosomeA12:74912516..74912644 -
CM018226.1chromosomeCM018226.1:38417229..38417354 -
D5_12chromosomeD5_12:21169986..21170104 +
KI_12chromosomeKI_12:41805592..41805710 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:29386974..29387101 +
D10_12chromosomeD10_12:33348217..33348335 -
CM016625.1chromosomeCM016625.1:101592176..101592295 -
Dt_chr8chromosomeDt_chr8:34321642..34321764 -
D12chromosomeD12:37634726..37634848 -
A12chromosomeA12:61151941..61152069 -
Ghir_D12chromosomeGhir_D12:40780368..40780490 -
D12chromosomeD12:40034557..40034679 -
A12chromosomeA12:80987078..80987206 -
D12chromosomeD12:40704935..40705057 -
A12chromosomeA12:77867671..77867796 -
D12chromosomeD12:38512236..38512358 -
A12chromosomeA12:74995182..74995307 -
scaffold1738supercontigscaffold1738:108882..109007 +
Gbar_D12chromosomeGbar_D12:37661079..37661204 -
D12chromosomeD12:39009652..39009777 -
A12chromosomeA12:74173068..74173197 -
CM017634.1chromosomeCM017634.1:38781448..38781570 -
CM017621.1chromosomeCM017621.1:75638585..75638714 -
CM017660.1chromosomeCM017660.1:41143270..41143389 -
CM017647.1chromosomeCM017647.1:78394173..78394300 -
CM017712.1chromosomeCM017712.1:39509292..39509417 -
CM017699.1chromosomeCM017699.1:74510418..74510546 -
D12chromosomeD12:40671909..40672031 -
A12chromosomeA12:81106432..81106560 -
Chr12chromosomeChr12:80740964..80741091 -
Chr12chromosomeChr12:87895707..87895834 -
Chr12chromosomeChr12:36600433..36600552 -
B_12chromosomeB_12:61623978..61624110 -
Chr08chromosomeChr08:36911788..36911908 -
Chr08chromosomeChr08:37909966..37910081 -
Chr08chromosomeChr08:25666418..25666540 -
Chr08chromosomeChr08:20209199..20209320 -
Chr08chromosomeChr08:24776250..24776698 -
E12chromosomeE12:82972489..82972612 -
F12chromosomeF12:65991480..65991603 -
Chr12chromosomeChr12:34519039..34519159 +
Chr08chromosomeSHIN-0607:1..494 .
Chr08:36164710..36165224 -
Chr8chromosomeSHIN-0607:1..494 .
Chr8:36305588..36306764 +
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch12_At.12N/A107.3MON_SHIN0607View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch12_At.12N/A65SHIN0607View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch12_At.12N/A46.26SHIN0607View
4MGG-293-793, MAGIC (2018)AD_ch26_Dt.12N/A137.1SHIN0607View
Sequence
>SHIN-0607 ID=SHIN-0607; Name=SHIN-0607; organism=Gossypium raimondii; type=genetic_marker; length=123bp
CTTCTGCACCAGCTCCTTCTCCTACAAGTGATGGTAACTCTTTTTTCTTC
TTCTTCTTCTTCTTCTTTTTTAACAATCTCTTTTGGGGTCTTTAGATCTC
TCTTGTTGGCTGCCATTTCAGTA