SHIN-0384, SHIN-0384 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSHIN-0384
Genbank IDAF336280
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceAF336280.1
Source TypeEST
Primer 1SHIN-0384_F: AAGAGTCGCCACTCACCATT
Primer 2SHIN-0384_R: TTCCTCACAGCAAGAGCAAG
PolymorphismP_ SHIN-0384
Publication[view all]
ContactMonsanto
CommentGHDEL65; Primer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF336280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:61328617..61328801 +
A08chromosomeA08:115164262..115164438 +
CM018222.1chromosomeCM018222.1:57713192..57713388 +
CM018209.1chromosomeCM018209.1:110491273..110491449 +
D5_08chromosomeD5_08:53964989..53965187 +
KI_08chromosomeKI_08:33990902..33991078 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:120053375..120053551 +
D10_08chromosomeD10_08:7191804..7191980 -
scaffold1637.1supercontigscaffold1637.1:336150..336334 +
At_chr10chromosomeAt_chr10:93582382..93582558 +
D08chromosomeD08:57987764..57987948 +
A08chromosomeA08:95725346..95725522 +
Ghir_D08chromosomeGhir_D08:60563213..60563397 +
Ghir_A08chromosomeGhir_A08:113737132..113737308 +
D08chromosomeD08:61137660..61137844 +
A08chromosomeA08:116606789..116606965 +
D08chromosomeD08:60403770..60403954 +
A08chromosomeA08:116554126..116554302 +
D08chromosomeD08:57690238..57690424 +
A08chromosomeA08:112512254..112512430 +
Dt08chromosomeDt08:60339427..60339621 +
At08chromosomeAt08:99993776..99993952 +
At08chromosomeAt08:99996281..99996457 +
scaffold9613supercontigscaffold9613:62359..62535 +
scaffold9613supercontigscaffold9613:64864..65040 +
scaffold10027supercontigscaffold10027:70491..70685 +
Gbar_D08chromosomeGbar_D08:57759458..57759652 +
Gbar_A08chromosomeGbar_A08:111185339..111185515 +
D08chromosomeD08:59661473..59661669 +
A08chromosomeA08:112244310..112244486 +
CM017630.1chromosomeCM017630.1:59277174..59277360 +
CM017617.1chromosomeCM017617.1:110663042..110663218 +
CM017656.1chromosomeCM017656.1:61488510..61488718 +
CM017643.1chromosomeCM017643.1:120117979..120118155 +
CM017695.1chromosomeCM017695.1:111287217..111287393 +
D08chromosomeD08:61131543..61131727 +
A08chromosomeA08:118467237..118467413 +
Chr08chromosomeChr08:122738084..122738260 +
Chr08chromosomeChr08:123702613..123702789 +
Chr08chromosomeChr08:54850822..54851020 +
B_08chromosomeB_08:95173131..95173309 +
Chr04chromosomeChr04:56258384..56258564 +
chr04chromosomechr04:42333219..42333403 +
Chr_04chromosomeChr_04:38876654..38876834 +
Chr04chromosomeChr04:58683039..58683223 +
Chr04chromosomeChr04:37048153..37048341 +
Chr04chromosomeChr04:31194465..31194645 +
Chr04chromosomeChr04:37675694..37675957 +
E08chromosomeE08:111997028..111997206 +
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF336280.1AF336280.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A73.3SHIN-0384View
2W10 x TM-1, F2:3 (2015)AD_ch24_Dt.08N/A41.9SHIN-0384View
3Monsanto SSR Bin Map, (2009)AD_ch24_Dt.08N/A41SHIN-0384View
4(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch24_Dt.08N/A44MON_SHIN0384aView
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch24_Dt.08N/A127.5MON_SHIN0384bView
6Yumian-1 x T586, RIL (2015)AD_ch24_Dt.08N/A100.4SHIN0384View
7Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A9SHIN0384View
8CCRI-35 x Yumian-1, RIL (2015)AD_ch24_Dt.08N/A8.6SHIN0384View
9CCRI-35 x Yumian-1, RIL (2017)AD_ch24_Dt.08N/A82.88SHIN0384View
10TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A73.49SHIN-0384View
11TM-1 x Hai-7124, BC1 (2012)AD_ch24_Dt.08N/A91.4shin-0384-200View
Sequence
>SHIN-0384 ID=SHIN-0384; Name=SHIN-0384; organism=Gossypium hirsutum; type=genetic_marker; length=185bp
AAGAGTCGCCACTCACCATTGTCCAGTATAGTTGGAATCTATTTGCATCT
GATCTAATTGTTGGTGGACACACACACACACACACACATACATGTAGCTT
TTAGCTTTGAAATGTCTACTGGAGTTCAACATCAAGAGAGAGTACCAATG
AACCTGAAGAAACAACTTGCTCTTGCTGTGAGGAA