SHIN-0302, SHIN-0302 (genetic_marker) Gossypium arboreum

Marker Overview
NameSHIN-0302
Genbank IDBF269648
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
Source TypeEST
Primer 1SHIN-0302_F: GGCTTCTCCTCCTTTAAGTTTGA
Primer 2SHIN-0302_R: GCATATGCCTTTGGTCCACT
Restriction EnzymeEcoRI; XhoI
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBF269648
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:6983286..6983401 +
A01chromosomeA01:9236500..9236621 +
CM018215.1chromosomeCM018215.1:7235179..7235294 +
CM018202.1chromosomeCM018202.1:8414750..8414871 +
D5_01chromosomeD5_01:6779719..6779832 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:9624314..9624441 +
D10_01chromosomeD10_01:53441004..53441117 -
At_chr2chromosomeAt_chr2:8726275..8726396 +
At_chr2chromosomeAt_chr2:5148426..5148541 +
A01chromosomeA01:8020667..8020788 +
scaffold3721_D01supercontigscaffold3721_D01:8071..8186 -
Ghir_D01chromosomeGhir_D01:7681924..7682039 +
Ghir_A01chromosomeGhir_A01:8423861..8423982 +
D01chromosomeD01:7497959..7498074 +
A01chromosomeA01:8081870..8081991 +
D01chromosomeD01:7146309..7146424 +
A01chromosomeA01:8579420..8579540 +
A01chromosomeA01:8392582..8392703 +
At01chromosomeAt01:7635238..7635359 +
scaffold1265supercontigscaffold1265:259699..259820 +
scaffold507supercontigscaffold507:362659..362774 -
Gbar_D01chromosomeGbar_D01:7966344..7966459 +
Gbar_A01chromosomeGbar_A01:8452396..8452517 +
D01chromosomeD01:7687382..7687497 +
A01chromosomeA01:8110134..8110257 +
CM017623.1chromosomeCM017623.1:7414226..7414341 +
CM017610.1chromosomeCM017610.1:9433139..9433258 +
CM017649.1chromosomeCM017649.1:8237109..8237223 +
CM017636.1chromosomeCM017636.1:8598502..8598625 +
CM017701.1chromosomeCM017701.1:7597682..7597799 +
CM017688.1chromosomeCM017688.1:8609844..8609969 +
D01chromosomeD01:7813487..7813602 +
A01chromosomeA01:8590303..8590424 +
Chr01chromosomeChr01:8597886..8598014 +
Chr01chromosomeChr01:9434526..9434654 +
Chr01chromosomeChr01:6768678..6768791 +
B_01chromosomeB_01:8805941..8806054 +
Chr02chromosomeChr02:7358861..7358974 +
Chr02chromosomeChr02:8547258..8547484 +
Chr02chromosomeChr02:5790266..5790379 +
E01chromosomeE01:10105134..10105253 +
F01chromosomeF01:7479569..7479686 +
Germplasm
Stock NameType
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch15_Dt.01N/A0SHIN-0302View
2901-001 x sGK156, F2 (2019)AD_ch15_Dt.01N/A96.23SHIN-0302View
30-153 x sGK9708, RIL (2016)AD_ch01_At.01N/A58.2SHIN-0302aView
40-153 x sGK9708, RIL (2016)AD_ch01_At.01N/A42.9SHIN-0302bView
Sequence
>SHIN-0302 ID=SHIN-0302; Name=SHIN-0302; organism=Gossypium arboreum; type=genetic_marker; length=128bp
GGCTTCTCCTCCTTTAAGTTTGAATATTAAAAAAATAATCAGTGTGTGTG
TGTGTGTGTTTTTTTTTTTTCTTTGGTCTGGCTTGAAAATGGTGTGCTTT
TGTTTCCTAGTGGACCAAAGGCATATGC