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Marker Overview
Name | NBRI_e1952 |
Genbank ID | HQ527867 |
Type | SSR |
Species | Gossypium herbaceum |
Germplasm | Vagad |
Source Type | EST |
Repeat Motif | (TCT)5….(TTC)7 |
PCR Condition | Annealing temperature: 58 |
Primer 1 | NBRI_e1952_F: GGCTCACCTCTTCAGAGAAAG |
Primer 2 | NBRI_e1952_R: CAGTGATATGGGAGGTGTGG |
Product Length | 154 |
Publication | [view all] |
Contact | Lin, Zhong-Xu
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Comment | Compound Imperfect; Primer data obtained in 2012 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2012 | Jena SN, Srivastava A, Rai KM, Ranjan A, Singh SK, Nisar T, Srivastava M, Bag SK, Mantri S, Asif MH, Yadav HK, Tuli R, Sawant SV. Development and characterization of genomic and expressed SSRs for levant cotton (Gossypium herbaceum L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2012 Feb; 124(3):565-76 |
2015 | Wang H, Jin X, Zhang B, Shen C, Lin Z. Enrichment of an intraspecific genetic map of upland cotton by developing markers using parental RAD sequencing. DNA research : an international journal for rapid publication of reports on genes and genomes. 2015 Feb 5. |
Germplasm
Stock Name | Type |
Vagad | accession |
Sequence
>NBRI_e1952 ID=NBRI_e1952; Name=NBRI_e1952; organism=Gossypium herbaceum; type=genetic_marker; length=154bp GGCTCACCTCTTCAGAGAAAGAATCTTCTTCTTCTTCTTTCTTTCTTCTT CTTCTTCTTCTTCACTTTACATCCATCAAGGCTGAAGAAAAAAATTAGGT TATTCTGAGTGATGGGTGTGAGCTGCCGTTGTTCCCACACCTCCCATATC ACTG
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