NAU5434, NAU5434 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU5434
Genbank IDDR454977
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDR454977.1
Source TypeEST
Repeat Motif(ggagca)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU5434_F: AAAAGAACTTACGGCACAGG
Primer 2NAU5434_R: AAATCACTGGCACTGGAATC
Restriction EnzymeEcoRI; XhoI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR454977
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:56164981..56165219 +
A06chromosomeA06:106329132..106329381 -
CM018220.1chromosomeCM018220.1:51028314..51028552 +
CM018207.1chromosomeCM018207.1:101747858..101748119 -
D5_06chromosomeD5_06:49185233..49185471 +
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:114009972..114010233 -
D10_06chromosomeD10_06:11791144..11791388 -
CM016619.1chromosomeCM016619.1:30097074..30097324 +
Dt_chr10chromosomeDt_chr10:3253560..3253803 +
Dt_chr10chromosomeDt_chr10:3251710..3251948 +
At_chr10chromosomeAt_chr10:23769386..23769635 +
D06chromosomeD06:52427568..52427806 +
A06chromosomeA06:89924629..89924878 -
Ghir_D06chromosomeGhir_D06:54687000..54687238 +
Ghir_A06chromosomeGhir_A06:109228502..109228751 -
D06chromosomeD06:53881655..53881893 +
A06chromosomeA06:112023041..112023290 -
D06chromosomeD06:53899993..53900231 +
A06chromosomeA06:110881086..110881335 -
D06chromosomeD06:51189208..51189446 +
A06chromosomeA06:106770181..106770430 -
At06chromosomeAt06:86140840..86141101 -
scaffold8174supercontigscaffold8174:20659..20897 -
scaffold1286supercontigscaffold1286:285414..285675 -
Gbar_D06chromosomeGbar_D06:51203648..51203886 +
Gbar_A06chromosomeGbar_A06:100666054..100666315 -
D06chromosomeD06:51412753..51412991 +
A06chromosomeA06:103882398..103882659 -
CM017628.1chromosomeCM017628.1:51820582..51820820 +
CM017615.1chromosomeCM017615.1:106780100..106780367 -
CM017654.1chromosomeCM017654.1:54677494..54677732 +
CM017641.1chromosomeCM017641.1:111884396..111884657 -
CM017706.1chromosomeCM017706.1:51727843..51728081 +
CM017693.1chromosomeCM017693.1:105084749..105085004 -
D06chromosomeD06:54612115..54612353 +
A06chromosomeA06:113049189..113049438 -
Chr06chromosomeChr06:111978652..111978907 -
Chr06chromosomeChr06:114164327..114164588 -
Chr06chromosomeChr06:48951613..48951851 +
B_06chromosomeB_06:10829656..10829907 +
Chr10chromosomeChr10:51324036..51324280 +
chr10chromosomechr10:39205503..39205740 +
Chr_10chromosomeChr_10:35512894..35513138 +
Chr10chromosomeChr10:33627246..33627490 +
Chr10chromosomeChr10:28751720..28751964 +
E06chromosomeE06:19236109..19236353 -
F06chromosomeF06:86266706..86266967 +
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR454977.1DR454977.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch06_At.06N/A44.3NAU5434View
2Emian-22 x 3-79, BC1 (2011)AD_ch06_At.06N/A98.81NAU5434View
3AD-genome wide Reference Map (2009)AD_ch06_At.06N/A115NAU5434View
4Yumian-1 x T586, RIL (2015)AD_ch06_At.06N/A63.2NAU5434View
5DH962 X Ji Mian 5, F2 (2015)AD_ch06_At.06N/A34.66NAU5434View
6GX1135 x GX100-2, RIL (2015)AD_ch06_At.06N/A36.1NAU5434View
7GX1135 x GX100-2, RIL (2016)AD_ch06_At.06N/A82.1NAU5434View
80-153 x sGK9708, RIL (2016)AD_ch06_At.06N/A43.5NAU5434View
9DH962 x Ji Mian 5, RIL (2015)AD_ch06_At.06N/A32.6NAU5434View
10SG 747 x Giza 75, BIL (2013)AD_ch06_At.06N/A66.5NAU5434View
11TM-1 x Hai-7124, BC1 (2007)AD_ch06_At.06N/A99.9NAU5434-280View
12TM-1 x Hai-7124, BC1 (2008)AD_ch06_At.06N/A56.96NAU5434-280View
13TM-1 x Hai-7124, BC1 (2012)AD_ch06_At.06N/A55NAU5434-280View
14(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch06_At.06N/A44.3NAU5434View
Sequence
>NAU5434 ID=NAU5434; Name=NAU5434; organism=Gossypium hirsutum; type=genetic_marker; length=250bp
AAAAGAACTTACGGCACAGGCAGAAAAAAACGAGAACTGAAAGCCTTAGG
ATGGCCGAATAAAACAAAAATCTCTAGCAAGTCATTCAAGTCTATGAAAA
CTACAAACTAACCTGTGTCAAAATCACAGATACCATCACAATAACAAATT
TTTTAAATAGGAAAAACATTTGCAAAAATAAGAAAACCTCACTCCCAGCC
AGTGGGAGCAGGAGCAGGAGCAGATACATCGATTCCAGTGCCAGTGATTT