NAU5380, NAU5380 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU5380
Genbank IDDR462359
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDR462359.1
Source TypeEST
Repeat Motif(catccg)5
PCR ConditionAnnealing temperature: 57
Primer 1NAU5380_F: CTTTGCCTCCTCATTACCAT
Primer 2NAU5380_R: TTGAGTTGGGGGCTTAGTAG
Restriction EnzymeEcoRI; XhoI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR462359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:47123919..47124063 +
A06chromosomeA06:86918479..86918635 +
CM018220.1chromosomeCM018220.1:42349377..42349509 +
CM018207.1chromosomeCM018207.1:78880548..78880704 -
D5_06chromosomeD5_06:40825942..40826080 +
D10_06chromosomeD10_06:20161991..20162123 -
CM016619.1chromosomeCM016619.1:48610565..48610700 -
Dt_chr10chromosomeDt_chr10:44859453..44859597 -
D06chromosomeD06:43306648..43306792 +
A06chromosomeA06:73032065..73032221 +
Ghir_D06chromosomeGhir_D06:45800419..45800563 +
Ghir_A06chromosomeGhir_A06:84543365..84543521 -
D06chromosomeD06:45284137..45284281 +
A06chromosomeA06:87443105..87443261 -
D06chromosomeD06:45279707..45279851 +
A06chromosomeA06:86067683..86067839 -
D06chromosomeD06:42326262..42326406 +
A06chromosomeA06:83340146..83340302 -
scaffold7727supercontigscaffold7727:382860..382992 -
scaffold16552supercontigscaffold16552:82395..82551 -
Gbar_D06chromosomeGbar_D06:42519723..42519855 +
Gbar_A06chromosomeGbar_A06:77764569..77764725 -
D06chromosomeD06:42875263..42875395 +
A06chromosomeA06:80927313..80927469 -
CM017628.1chromosomeCM017628.1:43159641..43159785 +
CM017615.1chromosomeCM017615.1:83809823..83809979 -
CM017654.1chromosomeCM017654.1:45485903..45486041 +
CM017641.1chromosomeCM017641.1:86942976..86943114 -
CM017706.1chromosomeCM017706.1:42950137..42950269 +
CM017693.1chromosomeCM017693.1:82064159..82064309 -
D06chromosomeD06:45683900..45684044 +
A06chromosomeA06:87940362..87940518 -
Chr06chromosomeChr06:87033930..87034074 -
Chr06chromosomeChr06:88951626..88951767 -
Chr06chromosomeChr06:40597586..40597724 +
B_06chromosomeB_06:34877458..34877602 +
Chr10chromosomeChr10:42814992..42815136 +
Chr10chromosomeChr10:44350360..44350510 -
Chr10chromosomeChr10:23837284..23837486 +
F06chromosomeF06:68670127..68670265 +
Chr06chromosomeChr06:83988444..83988586 +
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR462359.1DR462359.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
160182 x Jun Mian 1, F2:3 (2007)AD_ch16_Dt.07N/A32NAU5380View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch25_Dt.06N/A43NAU5380View
3CCRI-36 x G2005, RIL (2016)AD_ch06_At.06N/A31.08NAU5380View
Sequence
>NAU5380 ID=NAU5380; Name=NAU5380; organism=Gossypium hirsutum; type=genetic_marker; length=158bp
CTTTGCCTCCTCATTACCATGGAATTTCGCCTGTAGTGCCACCTGCTCAC
CCACCAAGCCACCACCACCACCATCACCATCCCCATCCGCATCCGCATCC
GCATCCGCATCCGCATCCCCACCAGCCAACCCCTTCCCCTACTAAGCCCC
CAACTCAA