NAU5077, NAU5077 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU5077
Genbank IDDT558575
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
TM-1
Source SequenceDT558575.1
Source TypeEST
Repeat Motif(cag)19
PCR ConditionAnnealing temperature: 57
Primer 1NAU5077_F: GCCAAAAGCCTGTGATTTAT
Primer 2NAU5077_R: CATGCAAGAACTGCTGCT
Restriction EnzymeEcoRI; NotI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT558575
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:54620761..54621024 +
CM018206.1chromosomeCM018206.1:62575347..62575580 +
D5_05chromosomeD5_05:43419411..43419638 -
KI_05chromosomeKI_05:32455521..32455754 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:76831951..76832190 +
D10_05chromosomeD10_05:15338858..15339085 +
CM016618.1chromosomeCM016618.1:26262217..26262450 +
At_chr3chromosomeAt_chr3:1227670..1227921 +
Dt_chr9chromosomeDt_chr9:22332307..22332540 -
A05chromosomeA05:49494405..49494668 +
Ghir_D05chromosomeGhir_D05:47663276..47663509 -
Ghir_A05chromosomeGhir_A05:67092412..67092675 -
A05chromosomeA05:68697686..68697949 +
A05chromosomeA05:67477900..67478151 +
D05chromosomeD05:49424978..49425211 -
A05chromosomeA05:66447603..66447866 +
D05chromosomeD05:48178847..48179080 -
At05chromosomeAt05:48940288..48940521 +
scaffold5512supercontigscaffold5512:215412..215645 +
Gbar_D05chromosomeGbar_D05:44952459..44952692 +
Gbar_A05chromosomeGbar_A05:63090661..63090894 +
A05chromosomeA05:65595751..65595984 +
D05chromosomeD05:49615050..49615283 -
CM017614.1chromosomeCM017614.1:64553744..64553977 +
CM017627.1chromosomeCM017627.1:48554938..48555171 -
CM017653.1chromosomeCM017653.1:49683088..49683327 -
CM017692.1chromosomeCM017692.1:64651117..64651350 +
A05chromosomeA05:69139336..69139599 +
D05chromosomeD05:50192053..50192286 -
Chr05chromosomeChr05:69333494..69333727 +
Chr05chromosomeChr05:44186501..44186728 -
B_05chromosomeB_05:27326106..27326339 +
Chr09chromosomeChr09:32578303..32578536 -
Chr09chromosomeChr09:33573170..33573394 -
E05chromosomeE05:79130315..79130536 -
F05chromosomeF05:56314914..56315156 +
Chr05chromosomeChr05:33972148..33972375 +
Chr09chromosomeNAU5077:1..826 .
Chr09:43771633..43772678 -
scaffold222supercontigNAU5077:1..826 .
scaffold222:160894..161939 -
Germplasm
Stock NameType
TM-1accession
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT558575.1DT558575.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch05_At.05N/A25NAU5077View
2(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch05_At.05N/A77.5NAU5077View
3(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch05_At.05N/A77.7NAU5077View
4Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A94.7NAU5077View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A172.2NAU5077View
6901-001 x sGK156, F2 (2019)AD_ch05_At.05N/A7.55NAU5077View
Sequence
>NAU5077 ID=NAU5077; Name=NAU5077; organism=Gossypium hirsutum; type=genetic_marker; length=264bp
GCCAAAAGCCTGTGATTTATCAAGACCCAGTTGTTCAAATCCCATCTGGG
GTTAACAGGATTCCTGCAAACACTGTCGATCCAAAGCTTAATATCTCTGA
TCCGAACTCAATTGGCCGAGTTCAGATACAACAACAAGTTCAGGATTCTG
GTTATGTATTGCAGCAACCACAATTCGATCAACAGCAACAACCACAACAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGTTCTTGCATG